CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.861e-45
Identity = 95/247 (38.46%), Postives = 149/247 (60.32%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ +Q GQCGNQ+GA+FW+ +C EHGI   G      DL  +R +V++ +A    FVPRA+L+DLEP  +    S      F  ++      G  AGNNW  G Y  G  + + V+D++++EAE CD L+ F + H              + +I+EE+P +++ T+S+FP+  + SD VV+PYN+ L++H+L+EN+D  +V+DN +L      +L++ TP+F  +N LIS  M+  T  +RFPG
Sbjct:    1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG-DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPG 240          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.431e-45
Identity = 93/246 (37.80%), Postives = 144/246 (58.54%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    ++PRA+L+DLEP  ++ +++G Y  ++  +N        GAGNNWA G Y +G  + + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L LT P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.147e-45
Identity = 91/247 (36.84%), Postives = 147/247 (59.51%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP--SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +C EH ID  G    +N L  +R ++++ +A    F+P A+L DLEP  ++S+++  Y  ++ P+N    +   GAGNNW  G Y++G ++ + ++D++ +E +N D L+GF + H              +  + + Y  +M+ TFSVFP  + + SD VV+PYN+ L++ +L+ + D  +V+DN +L  I    LKL  P+F   N +IS  MS  T  LR+PG
Sbjct:    3 REIITLQCGQCGNQIGVEFWKQLCNEHNIDQEGILKNNNFLNEDRKDIFFYQADDEHFIPGALLFDLEPRVINSIQTSEYRNLYNPENMFISKEGGGAGNNWGCG-YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPG 248          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.058e-44
Identity = 91/246 (36.99%), Postives = 144/246 (58.54%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    ++PRA+L+DLEP  ++S+++  Y  ++  +N        GAGNNWA G Y +G ++ + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 84/197 (42.64%), Postives = 123/197 (62.44%), Query Frame = 1
Query:  247 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+ +VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:   11 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 207          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.881e-43
Identity = 90/247 (36.44%), Postives = 144/247 (58.30%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVH-QLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    ++PRA+L+DLEP  ++ +++  Y  ++  +N        GAGNNWA G Y +G ++ + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L+++ +L  NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHYIPRALLLDLEPRVINGIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPG 248          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42
Identity = 87/243 (35.80%), Postives = 142/243 (58.44%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFG-QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            REI+ +  GQCGNQ+G++F++ +C+EHGI   G  +  N+   +R +V++ +A   R+VPR++ +DLEP  +DS+R+  +   + P+NF+    +GAGN+WA G+YT   E +  + +++ +E E+CD L+GF  CH              +  I E+YP  ++ +FSV       D VV PYN+ L++ +L+      +V DN AL DI      +   +  D+N +IS++MS  T  LRFP
Sbjct:    3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLS-TNEFIDDRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYT--TEKMSEIEEIIDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKEN-PDVVVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFP 241          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.249e-41
Identity = 88/252 (34.92%), Postives = 141/252 (55.95%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERV--------NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G Q+G K WE+ C EHGI   G    +++ +   +        N ++ E   GR VPRA+ +D EP  +D +++G Y  ++ P++ + G+  A +N+AKG  T    L++  +D +RK  ENC  LQGF + +                K+ ++Y  +  L   ++PSPK+S  VVEPYNA L+ H +++  +   ++DNE++Y IC + L + +PS+  LN LI+  MS +T  LRF G
Sbjct:    1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEG 251          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.803e-40
Identity = 89/246 (36.18%), Postives = 142/246 (57.72%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW  + AEHGI   G          +R +V++ +A    ++PRA+L+DLEP  ++S++   +  ++ P+N      G  AGNNWA G YT   E  + ++D++ +E +N D L+GF + H              + ++ + YP +++ T+SVFP+    S  VV PYN+ L++ +L+ NAD  +V+DN +L+ I    L+L   SF + N +IS  M+  T  LR+PG
Sbjct:    3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEGTDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDRE-DNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.851e-40
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 1
Query:  571 REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CLRFPGQ
Sbjct:    1 REEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 90          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBG_ENCCU1.861e-4538.46Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG1_ARATH2.431e-4537.80Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_PLAFO4.147e-4536.84Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_PHYPA2.058e-4436.99Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBA1_CHICK4.585e-4442.64Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBG_ANEPH3.881e-4336.44Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG_ENTHI9.560e-4235.80Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBA1_ENTHI1.249e-4134.92Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBG_RETFI1.803e-4036.18Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBB_STRPU6.851e-4086.67Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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