CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.993e-39
Identity = 88/246 (35.77%), Postives = 138/246 (56.10%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG--RYNGD-NDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            EI+ IQ GQCGN +G  FW  +  EHGID  G  +YN D   ++ +  N ++ + +  R+VPRA+++DLEP  +  V+S  +  +F P N      G  AGN+W+ G Y  G +  D ++D++ +E ++ D  +GFQ+ H              +  + + Y    + T+SVFPS K S+ VV PYN  L++ +L E+AD  ++ DN AL ++  RT +    S+   N LIS+ +S +T  LRFP
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQSS-FNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFP 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.893e-39
Identity = 86/243 (35.39%), Postives = 137/243 (56.38%), Query Frame = 1
Query:  115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP-YGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 831
            ++ +  GQCGNQ+   FW+ +  EHGI+  G+   ++D+  ++  ++Y +A    +VPRAVL+DLEP  ++ +   P +  +F  DN        GAGNNWA G Y +G E+ + ++D++ +EAEN + L G    H              + ++RE +P +++ T+SVF +   S D VV PYN  LS+ +L+EN D  +VLDN AL+ +     K  TP+F  +N L++  MS  T   RF
Sbjct:    7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRF 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.746e-35
Identity = 87/246 (35.37%), Postives = 135/246 (54.88%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLER---VNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            EI+ IQ GQCGNQ+G +FW  +  EHGI   G+     D  + R    NV++ +    RF PRA+L DLEP  +  V++   G  F   N    +   GAGN W+ G Y  G E  D  ++++ KE +     +GFQ+ H              +  + + Y  +++ T+SVFPS + S+ VV+PYN  L++ +L++N+D  ++ DN+AL ++  R L+ +  S+   N LI++ MS VT  LRFP
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDTNVFFRQNDHNRFTPRALLYDLEPSAIGDVQNCFPG-FFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPS-RESEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFP 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.301e-34
Identity = 72/200 (36.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:  247 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            +V++ +A    F+PR++L+DLEP  ++ +++  Y  ++  +N    +   GAGNNWA G Y +G + +D ++D+V +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ P+F   N L+S  MS  T  LR+PG
Sbjct:    1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPG 199          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.807e-32
Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = 1
Query:  355 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT-LKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            +F P+  + G+  A NN+A+GHYT G E++D  LD VRK ++NC  LQGF V +              + ++  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+ L +  P++ +LN L+S  +S +T  LRF G
Sbjct:    1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLLDIERPTYTNLNRLVSQIISSLTTSLRFDG 162          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.867e-32
Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  310 EPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            +P    S + G Y QIF P+  + G+  A NN+A GHYT G E ID +LD +RK A+ C  LQGF V H              +  +   Y  +  L FS++P+P+VS  +V+PYN+ L+ H  +E++D   ++DN+A+YDIC   L +  P++ +LN LIS  +S +T  LRF G
Sbjct:   10 DPSQPLSRQHGTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDG 185          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 8.969e-32
Identity = 68/181 (37.57%), Postives = 107/181 (59.12%), Query Frame = 1
Query:  298 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            L DLEP  + S+++ PY  I+ P+NF   +  +GAGNNW  G Y+ G ++ + + D++ +EA+  D L+GF + H              + ++ + +P +++ T+SVFP+ +  D VV+PYN+ LS+ +L +NAD  +VLDN AL  I    L + TPSF   N L+S  MS  T  LR+P
Sbjct:    1 LADLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYP 180          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.691e-30
Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  382 GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMM-LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            G+  A NN+A+GHYT G ELI+   D +RK A+ C+ LQGF V H              + ++  EY  +   L F V+PSP+VS +VVEPYN+ LS H L+E+ D   +LDNEA+Y+IC ++L +  P++ +LN LI+  +S +T  LRFPG
Sbjct:    3 GKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYTNLNRLIAQVISSLTSSLRFPG 155          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.885e-30
Identity = 80/246 (32.52%), Postives = 126/246 (51.22%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLER---VNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            EI+ +Q GQCGN +G   W  +  EH I + G  +   D   ER      ++ E S  +F PRA++MD EP  +  V +  +   F P N      G  AGN+WA G Y  G    D +L+ + KE ++ D  +GFQ+ H              +  + + YP +++ T+SVFP+ + S+ VV+ YN  L++ +L+E++D  +V DN +L +I  +  +         N LIS  +S VT  +RFP
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDG-LSQLPDSSTERDDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVEN-TFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFP 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.212e-28
Identity = 71/218 (32.57%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHG-IDSTGRYNGDNDLQLERVNVYY----NEASCGRFVP---RAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 735
            M + + +Q GQCGNQIG  FW++   EH  ++  G Y+         V+          S G+      RAVL+D+E G ++ +  GP   +F     +   SG+GNNWA GH   G+   D +L+  RK AE+CDCLQ F + H              +  + +E+P+      S++PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILAMKELNEHADCVLPIDNQSLFDI 217          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBG_CANGA1.993e-3935.77Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CAEEL9.893e-3935.39Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_ASHGO1.746e-3535.37Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG3_MAIZE4.301e-3436.00Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBA2_ANEPH1.807e-3241.98Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA4B_HUMAN6.867e-3239.20Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBG_COCHE8.969e-3237.57Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBA_DICPU1.691e-3043.79Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBG_YEAST2.885e-3032.52Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBE_HUMAN1.212e-2832.57Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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