CK935337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28 Identity = 71/218 (32.57%), Postives = 112/218 (51.38%), Query Frame = 1 Query: 106 MREILHIQGGQCGNQIGAKFWEVVCAEHG-IDSTGRYNGDNDLQLERVNVYY----NEASCGRFVP---RAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 735 M + + +Q GQCGNQIG FW++ EH ++ G Y+ V+ S GR RAVL+D+E G ++ + GP +F + SG+GNNWA GH G + +L+ +RK AE CDCLQ F + H + + +E+P+ +V+PS + D + PYN+ L++ +L E+AD + +DN++L+DI Sbjct: 1 MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDI 217
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.093e-27 Identity = 86/282 (30.50%), Postives = 136/282 (48.23%), Query Frame = 1 Query: 112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGR---YNGD-NDLQLERVN-------------------------VYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEAL---YDICFRTLKLTTPSFGDL----NHLISATMSGVTCCLRFPG 837 E + +Q GQCGNQ+G ++W+ + EHGI S G Y D NDLQL+ +N +++ + + PR++L+D+EP + +S +F P N +GA NNW G Y G E +++L+++ +E + CD L FQ+ H + I + Y + +L TFS+FPS + SD VV+PYN L++ +L++ +D V N++L +I F DL N LI+ + V+ LRFPG Sbjct: 4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPG 282
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26 Identity = 69/237 (29.11%), Postives = 122/237 (51.48%), Query Frame = 1 Query: 115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRS--GPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813 ++ +Q GQCGNQ+G +F++++C++ +ND Q +++E CG V RAVL+D+EP + S G G+ + F Q G GNNWA G+ G + D V+D+VRK+ E CD L GF +R+ YPD ++L ++P + +V+ YN+ L++ L ++D +V +N+ ++ +C + + + SF D+N +I+ + + Sbjct: 3 VVTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRENDYYQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21 Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 166 WEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC 486 WE+ EHGI G D + + + N +++E G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC Sbjct: 2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNC 110
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21 Identity = 59/237 (24.89%), Postives = 119/237 (50.21%), Query Frame = 1 Query: 115 ILHIQGGQCGNQIGAKFWEVVCAE-HGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RSGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813 I+ +Q GQCGNQIG + ++ + ++ H + Q +++E G + RAVL+D+EP ++ + ++ GQ + F Q G+GNNWA G+ G +S+++++RKE E CD GF + + ++Y + + + ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + SF D+N +++ + V Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV 238
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21 Identity = 59/237 (24.89%), Postives = 121/237 (51.05%), Query Frame = 1 Query: 115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RSGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813 ++ +Q GQCGNQIG + ++ + ++ +N+ Q +++E G + RAVL+D+EP ++ ++ GQ + F Q G+GNNWA G+ G +S++++++KE E CD L GF + ++++Y + + + ++P + +V+ YN+ L++ L ++D +V +N+A++ IC + + + SF D+N +++ + V Sbjct: 3 VVTVQLGQCGNQIGFEVFDALYSDSHCPQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQHSCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV 238
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21 Identity = 60/241 (24.90%), Postives = 119/241 (49.38%), Query Frame = 1 Query: 115 ILHIQGGQCGNQIGAKFWEVVCAE-HGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813 I+ +Q GQCGNQIG + ++ + ++ H + Q +++E G + RAVL+D+EP ++ S + + + +GQ G+GNNWA G+ G +S++D++RKE E CD GF + ++++Y + + + ++P + +V+ YN+ L++ L ++D +V +N+A++ IC + + + SF D+N +++ + V Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLS----KAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV 238
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20 Identity = 61/241 (25.31%), Postives = 119/241 (49.38%), Query Frame = 1 Query: 115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813 I+ +Q GQCGNQIG + ++ + + DN+ Q ++ E G V RAVL+D+EP ++ S + + + +GQ G+GNNWA G+ G + +S++++++ E E CD L GF + K++++Y + + ++P + +V+ YN+ L++ L ++D ++ +N+A++ IC + + + SF DLN +++ + V Sbjct: 3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLS----KAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV 238
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20 Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 475 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837 A+ C LQGF + H + ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LIS +S +T LRF G Sbjct: 1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDG 121
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19 Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 475 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837 A+ C LQGF V H + ++ EY + L FSV+P +VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S VT LRF G Sbjct: 1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNG 121 The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 423
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bpback to top |