CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 71/218 (32.57%), Postives = 112/218 (51.38%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHG-IDSTGRYNGDNDLQLERVNVYY----NEASCGRFVP---RAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 735
            M + + +Q GQCGNQIG  FW++   EH  ++  G Y+         V+          S GR      RAVL+D+E G ++ +  GP   +F     +   SG+GNNWA GH   G    + +L+ +RK AE CDCLQ F + H              +  + +E+P+      +V+PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDI 217          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.093e-27
Identity = 86/282 (30.50%), Postives = 136/282 (48.23%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGR---YNGD-NDLQLERVN-------------------------VYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEAL---YDICFRTLKLTTPSFGDL----NHLISATMSGVTCCLRFPG 837
            E + +Q GQCGNQ+G ++W+ +  EHGI S G    Y  D NDLQL+ +N                         +++  +    + PR++L+D+EP  +   +S     +F P N       +GA NNW  G Y  G E  +++L+++ +E + CD L  FQ+ H              +  I + Y  + +L TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG
Sbjct:    4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPG 282          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 69/237 (29.11%), Postives = 122/237 (51.48%), Query Frame = 1
Query:  115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRS--GPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813
            ++ +Q GQCGNQ+G +F++++C++           +ND  Q      +++E  CG  V RAVL+D+EP  +    S  G  G+     +  F Q  G GNNWA G+   G +  D V+D+VRK+ E CD L GF                     +R+ YPD ++L   ++P     + +V+ YN+ L++  L  ++D  +V +N+ ++ +C + + +   SF D+N +I+  +  +
Sbjct:    3 VVTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRENDYYQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  166 WEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC 486
            WE+   EHGI   G    D  + +  +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC
Sbjct:    2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNC 110          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 59/237 (24.89%), Postives = 119/237 (50.21%), Query Frame = 1
Query:  115 ILHIQGGQCGNQIGAKFWEVVCAE-HGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RSGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813
            I+ +Q GQCGNQIG + ++ + ++ H          +   Q      +++E   G  + RAVL+D+EP  ++ +  ++   GQ     +  F Q  G+GNNWA G+   G    +S+++++RKE E CD   GF +                   + ++Y + + +   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   SF D+N +++  +  V
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV 238          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 59/237 (24.89%), Postives = 121/237 (51.05%), Query Frame = 1
Query:  115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSV--RSGPYGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813
            ++ +Q GQCGNQIG + ++ + ++           +N+  Q      +++E   G  + RAVL+D+EP  ++    ++   GQ     +  F Q  G+GNNWA G+   G    +S++++++KE E CD L GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L  ++D  +V +N+A++ IC + + +   SF D+N +++  +  V
Sbjct:    3 VVTVQLGQCGNQIGFEVFDALYSDSHCPQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQHSCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV 238          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21
Identity = 60/241 (24.90%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  115 ILHIQGGQCGNQIGAKFWEVVCAE-HGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813
            I+ +Q GQCGNQIG + ++ + ++ H          +   Q      +++E   G  + RAVL+D+EP  ++   S    +  +   + +GQ        G+GNNWA G+   G    +S++D++RKE E CD   GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L  ++D  +V +N+A++ IC + + +   SF D+N +++  +  V
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLS----KAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV 238          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 61/241 (25.31%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  115 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGV 813
            I+ +Q GQCGNQIG + ++ +  +           DN+  Q      ++ E   G  V RAVL+D+EP  ++   S    +  +   + +GQ        G+GNNWA G+   G +  +S++++++ E E CD L GF +                  K++++Y   + +   ++P     + +V+ YN+ L++  L  ++D  ++ +N+A++ IC + + +   SF DLN +++  +  V
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLS----KAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV 238          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  475 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDG 121          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  475 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            A+ C  LQGF V H              + ++  EY  +  L FSV+P  +VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S VT  LRF G
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNG 121          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBE_MOUSE2.700e-2832.57Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_CANAL5.093e-2730.50Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBD_XENTR3.301e-2629.11Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]
TBA_PICAB1.099e-2144.04Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBD_HUMAN1.435e-2124.89Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_CANFA1.435e-2124.89Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBD_MACFA1.874e-2124.90Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_MOUSE2.072e-2025.31Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]
TBA4_CHICK4.617e-2038.02Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA3_CHICK1.754e-1940.50Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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