CK935342

Overview
NameCK935342
Unique NameCK935342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:1053..1857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935342 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.294e-21
Identity = 89/277 (32.13%), Postives = 132/277 (47.65%), Query Frame = 1
Query:    4 QFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLDNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKH----TVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGEIEKNANSSIFQKIAAFEEELKAVLPKEV-ENARQTVENGNPTIPNRIKECRSYPLYRLVREELGT-----NFLTGEKVTSPGEEFDKVFTAM 804
            Q +E++N   N GLPS L+   +PSL Y  KG +IA A+Y SEL  L NPVT HVQ AE  NQ VNSL LIS+R+T E+ D+L L+ +T L  + QAIDLR +E   K      +   + Q     +T G+N          K L K  ++ + +  +     A       + +VL   +L+   +          K+AA E  +   L ++V E         +P +       R+  LY  VREELG      +   G++  + G    K++ A+
Sbjct:  439 QLTEMLNAGMNRGLPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFGSAMT-GSNLRDELVEKVNKTLAKRLEQTNSYDLVPRWHDAFSFAAGTVVEVLSSTSLSLAAVNA-------WKVAAAESAIS--LTRQVRETFWSAASTSSPAL--SYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAI 702          
BLAST of CK935342 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    4 QFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLDNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHT 333
            Q +E++N   N  LPS L+   +PSL Y  KG +IA A+Y SEL  L NPV+ HVQ AE  NQ +NSL LIS+R+TAEA D+L L+ +T L  + QA+DLR +E   +HT
Sbjct:  441 QLTEMLNAGMNRALPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVSTHVQPAEMGNQAINSLALISARRTAEANDVLSLLLATHLYCVLQAVDLRAME--FEHT 547          
BLAST of CK935342 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    4 QFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLDNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 315
            Q +ELVN   N GLP +++   +PSL+Y  KG +IA A+Y +E      P   H+QSAE HNQ VNSL LIS+R T  ++++L  + +++L  LCQA+DLR L+
Sbjct:  455 QSTELVNPAMNRGLPPSVAA-TDPSLNYHAKGLDIATAAYVAEA----TPGPTHIQSAEMHNQAVNSLALISARATITSLEVLTSLIASYLYILCQALDLRALQ 553          
The following BLAST results are available for this feature:
BLAST of CK935342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PALY_RHOTO2.294e-2132.13Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_RHORB2.536e-2050.91Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_AMAMU7.635e-1746.15Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_G04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935342 ID=CK935342; Name=CK935342; organism=Citrus sinensis; type=EST; length=805bp
GGGCAATTTTCCGAACTTGTCAACGATTTTTACAACAATGGATTGCCGTC
AAATCTTTCCGGTGGCAGGAATCCTAGCCTGGATTATGGTTTCAAGGGCG
CTGAAATTGCTATGGCTTCCTATTGTTCCGAGCTCCAATTTCTTGACAAT
CCTGTTACTAACCACGTCCAAAGTGCTGAACAGCACAACCAAGATGTAAA
CTCCTTGGGACTGATCTCTTCCAGGAAGACTGCTGAAGCTGTGGATATCC
TGAAGCTCATGTCTTCCACATTCTTGGTAGCACTTTGCCAAGCTATTGAC
TTGAGGCATTTGGAGGAGAATTTGAAGCATACAGTGAAGGACACTGTGAG
CCAAGTAGCCAGGAAAGTCTTAACCGTCGGTGCCAATGGAGAGCTTCATC
CGTCAAGATTCTGTGAGAAGGATCTGCTCAAAGCGGCTGATCGCGAACAC
GTCTTTGCATACATTGATGACCCCTGCAGCGCTACCTATCCATTGATGCA
AAAGCTAAGGCAAGTACTTGTTGAGCATGCATTGAACAATGGAGAGATCG
AGAAGAATGCCAACTCCTCAATCTTCCAGAAGATTGCAGCCTTTGAGGAG
GAATTGAAAGCCGTTTTGCCCAAAGAAGTTGAGAACGCCAGGCAGACTGT
TGAGAATGGAAATCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCTT
ACCCATTGTACAGGTTAGTGAGGGAGGAGCTCGGGACTAATTTTCTGACT
GGGGAAAAAGTTACATCGCCCGGCGAGGAATTTGACAAAGTGTTTACAGC
AATGT
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