CK935349

Overview
NameCK935349
Unique NameCK935349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:349..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 5.956e-65
Identity = 127/137 (92.70%), Postives = 132/137 (96.35%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 1.733e-64
Identity = 125/136 (91.91%), Postives = 131/136 (96.32%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTAR STGG+APRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.467e-63
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 462
            MARTKQTARKSTGG+APRKQLATKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGER 135          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.467e-63
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 462
            MARTKQTARKSTGG+APRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 121/136 (88.97%), Postives = 129/136 (94.85%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 3.268e-63
Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRKQLATKA    A  TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 3.268e-63
Identity = 121/136 (88.97%), Postives = 131/136 (96.32%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRK +ATKA RK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CK935349 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 122/136 (89.71%), Postives = 128/136 (94.12%), Query Frame = 1
Query:   58 MARTKQTARKSTGGRAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 465
            MARTKQTARKSTGG+APRKQLATKAARKSAP  GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CK935349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33B_LILLO5.956e-6592.70Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3L5_ARATH1.733e-6491.91Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H32_USTMA1.467e-6391.11Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_LODEL1.467e-6389.71Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MORAP2.502e-6391.11Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_SCHPO2.502e-6388.97Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H32_CICIN3.268e-6391.18Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_CANAL3.268e-6388.97Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H3_MASBA4.268e-6391.18Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H31_USTMA9.508e-6389.71Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935349 ID=CK935349; Name=CK935349; organism=Citrus sinensis; type=EST; length=699bp
GGGGAAAGCAAATTTTTAGAGAGAGAAATTGAGTGGAAGAGTTGAAGAAA
CTCAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAA
GGGCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCC
ACCACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGC
CCTTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGA
AACTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACT
GATCTGCGTTTCCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGA
GGCTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATG
CAAAGCGTGTCACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATC
CGTGGCGAGCGTGCTTAAGTGTAATTGCTGCTTGCTTCAATTGAATGACT
GGAAGGGAAGGGGGAAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGT
GGGGGTAGATAGGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTTGT
CATCATCTGGGTTTGTTTTTGGTGGTGTTTTATAATGTCTATTTGTTGAT
GATGGGGATTTTAATTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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