CK935351

Overview
NameCK935351
Unique NameCK935351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.948e-55
Identity = 101/170 (59.41%), Postives = 121/170 (71.18%), Query Frame = 3
Query:  144 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            P + Q   ++ +   ++  A S     VPDM KR +MNL+LLG  SLP G + + Y  FF PP  G   GG  AKDA+GNDI A  WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH
Sbjct:   12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAH 178          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.567e-55
Identity = 100/156 (64.10%), Postives = 121/156 (77.56%), Query Frame = 3
Query:  189 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            + C A S   D VPDMGKR+LMNLLLLGA++ P      P+ +F  PP  G  AG G  AKDA+GND+  + WL TH PGDR+L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:   59 VSCSAAS---DDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAH 211          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIA_CHLRE (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.567e-55
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 3
Query:  144 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            PA+   + ++ +   ++  A S     VPDM KR +MNL+L G   LP   + + Y  FF PP  G  GGG  AKDA+GNDI A +WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH
Sbjct:   12 PAKASAIRRSRVMPVVRAAAAS---SEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAH 178          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.483e-54
Identity = 95/145 (65.52%), Postives = 115/145 (79.31%), Query Frame = 3
Query:  225 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAQ 659
            VPD+G+RQ +NLL +G  +      L P   +F PP  G AGGG  AKDA+GNDII +D+L TH  GDR+L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+  G+VVRGPAPLSLAL HA+
Sbjct:   10 VPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAE 154          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.239e-53
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 3
Query:  225 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 656
            VP MG+RQ MNLL  G V+      L P   +F PP  G +GGG TAKDA+GNDII +++L  H  G+RTL +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HA
Sbjct:   10 VPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDALGNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHA 153          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.028e-53
Identity = 92/144 (63.89%), Postives = 113/144 (78.47%), Query Frame = 3
Query:  225 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 656
            VPD+G+RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHA 153          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.049e-52
Identity = 101/156 (64.74%), Postives = 116/156 (74.36%), Query Frame = 3
Query:  189 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            I C A S   D VPDMGKR+LMNLLLLGA++ PT     P+ +F  PP  G  AG G  AKDA GNDI    WL T  PGDR+L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:   61 ISCSAAS---DEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAH 213          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.051e-52
Identity = 94/144 (65.28%), Postives = 109/144 (75.69%), Query Frame = 3
Query:  225 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 656
            VPDMG+RQ MNLL  G+ +     ML P   +F PP  G  GGG  AKDA+GNDI  +D+L  H   DR L +GLKGDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA
Sbjct:   10 VPDMGRRQFMNLLTFGSATGVALGMLYPVVRYFIPPASGGVGGGVVAKDALGNDISVSDFLAKHPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHA 153          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.876e-52
Identity = 93/150 (62.00%), Postives = 113/150 (75.33%), Query Frame = 3
Query:  204 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            T +PA  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+
Sbjct:    2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALAN 151          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.159e-51
Identity = 93/145 (64.14%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  225 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAQ 659
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA+
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAK 154          
The following BLAST results are available for this feature:
BLAST of CK935351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UCRIA_VOLCA2.948e-5559.41Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_CYAPA6.567e-5564.10Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRIA_CHLRE6.567e-5558.24Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNP29.483e-5465.52Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_TRIEI1.239e-5365.97Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRIB_SYNY38.028e-5363.89Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRIB_CYAPA1.049e-5264.74Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRI_CYAP43.051e-5265.28Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRI_SYNPW8.876e-5262.00Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_ANAVT1.159e-5164.14Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935351 ID=CK935351; Name=CK935351; organism=Citrus sinensis; type=EST; length=666bp
GGGGGAAATACAAAGTCTTACTCGGTTGCCTCCAATAATTCTCCACAATN
NNTTCCTCCTCTTCTCTCTCCTCGGCAACTCCTTCTCAGCTATGCTCAAG
CAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCAGCAA
GGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAG
GCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCT
CATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATGT
TGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGT
GGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTGA
TTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTGA
AGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCA
TATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAA
TTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATA
ACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCT
CATGCCCAACATTGAA
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