CK935351

Overview
NameCK935351
Unique NameCK935351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.776e-48
Identity = 86/150 (57.33%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  204 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.016e-47
Identity = 87/150 (58.00%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  204 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.326e-47
Identity = 85/150 (56.67%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  204 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.326e-47
Identity = 87/150 (58.00%), Postives = 105/150 (70.00%), Query Frame = 3
Query:  204 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            T + +  VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.732e-47
Identity = 85/150 (56.67%), Postives = 105/150 (70.00%), Query Frame = 3
Query:  204 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 653
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.678e-42
Identity = 86/159 (54.09%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  186 KIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAQ 659
            K   QA     D VPDMGKR+LMN L+L AV+         Y  +F PP  G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH +
Sbjct:   69 KAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVE 227          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.470e-38
Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  228 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 656
            P M +R L+N LL G+V +     L P   +F PP  G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A
Sbjct:   11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSA 152          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.275e-38
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  228 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 656
            P M +R  +N LL  +V +     L P   +F PP  G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A
Sbjct:   11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSA 152          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 70/150 (46.67%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  216 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 656
            A  +P M +RQL++ +  GA++  T   L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A
Sbjct:    6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKA 154          
BLAST of CK935351 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.473e-30
Identity = 68/141 (48.23%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  228 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLAL 647
            P   +RQL+N L    V++           FF PP   G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +
Sbjct:   10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKI 149          
The following BLAST results are available for this feature:
BLAST of CK935351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UCRI_PROM97.776e-4857.33Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM01.016e-4758.00Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP1.326e-4756.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM21.326e-4758.00Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM51.732e-4756.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA1.678e-4254.09Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJB1.470e-3853.15Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJA3.275e-3852.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_GLOVI3.507e-3246.67Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]
UCRIA_SYNY31.473e-3048.23Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935351 ID=CK935351; Name=CK935351; organism=Citrus sinensis; type=EST; length=666bp
GGGGGAAATACAAAGTCTTACTCGGTTGCCTCCAATAATTCTCCACAATN
NNTTCCTCCTCTTCTCTCTCCTCGGCAACTCCTTCTCAGCTATGCTCAAG
CAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACCAGCAA
GGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAG
GCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCT
CATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATGT
TGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGT
GGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTGA
TTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTGA
AGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCA
TATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAA
TTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATA
ACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCT
CATGCCCAACATTGAA
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