CK935357

Overview
NameCK935357
Unique NameCK935357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:24..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.408e-48
Identity = 99/192 (51.56%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   78 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL+ GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+W
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQW 190          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.408e-48
Identity = 96/190 (50.53%), Postives = 125/190 (65.79%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            RKFFVGGNWK NG  + ++++ +TLN A+                     +S L  +  VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +  KVA+AL  GL VIAC+GE L++RE+G T  VV  QTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR+W
Sbjct:    4 RKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTIYLDYA--RSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQW 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.451e-48
Identity = 96/190 (50.53%), Postives = 124/190 (65.26%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            RKFFVGGNWK NG  + + ++++TLN  +                     K  L +   ++AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  E ++ +  KVA+ALS G+ VIAC+GE L+QRE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+W
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAIYLDFARQK--LDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREW 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.451e-48
Identity = 99/191 (51.83%), Postives = 124/191 (64.92%), Query Frame = 3
Query:   81 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +  KV +ALS GL VIAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR W
Sbjct:    4 SRKFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGW 192          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.813e-48
Identity = 97/190 (51.05%), Postives = 124/190 (65.26%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            R+FFVGGNWK NG  E +++++STLN A                      +S L S   VAAQNC+    GAFTGE+S  M+ +    WVILGHSERR +  E+++ +  KVA+AL   L VIAC+GE LE+RE+G+T  V+  QT+ IAE + +W+ VVLAYEPVWAIGTGK ATP QAQEVH +LR W
Sbjct:    4 RRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSIYLDFA--RSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAW 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 96/191 (50.26%), Postives = 122/191 (63.87%), Query Frame = 3
Query:   81 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +  KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK I + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR W
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTKVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGW 192          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 9.915e-48
Identity = 98/192 (51.04%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   78 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL+ GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTG+ ATP QAQEVHA LR+W
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQW 190          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.295e-47
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            RKFFVGGNWK NG  + + +++ TLN A                      K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +  KV++AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR W
Sbjct:    5 RKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGW 192          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.295e-47
Identity = 98/191 (51.31%), Postives = 122/191 (63.87%), Query Frame = 3
Query:   81 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            +RKFFVGGNWK NG  E + +++ TLN A                      +S L     VAAQNC+    GAFTGE+S  M+ +  I WVILGHSERR +  ES++ +  KVA+ L   L VIAC+GE LE+RE+G+T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR W
Sbjct:    3 SRKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSIYLDYA--RSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGW 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.209e-47
Identity = 93/190 (48.95%), Postives = 124/190 (65.26%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 653
            RKFFVGGNWK NG  + + +++ TLN A+                     K  +   F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +  KV++ALS GL V+AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKW
Sbjct:    3 RKFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLK--VDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKW 190          
The following BLAST results are available for this feature:
BLAST of CK935357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DROSI3.408e-4851.56Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPISB_DANRE3.408e-4850.53Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_XENLA4.451e-4850.53Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_RAT4.451e-4851.83Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_ORYLA5.813e-4851.05Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_GORGO7.592e-4850.26Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_DROME9.915e-4851.04Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_MOUSE1.295e-4751.05Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPISA_DANRE1.295e-4751.31Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_LATCH2.209e-4748.95Triosephosphate isomerase OS=Latimeria chalumnae P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935357 ID=CK935357; Name=CK935357; organism=Citrus sinensis; type=EST; length=653bp
GGGGACAAACAGGGCGCTTATTTCTCGNNNNNNCGTCTCGCTTTCATCGC
CAAACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGG
CGGCAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTT
CTACATTGAATGAAGCTGAAGTCCCTTCTGAGGATGTTGTGGAGGTTGTT
GTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTC
TGATTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTT
TTACCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAACGA
TTTTGTTGAAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCA
TTGCTTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTG
GCTGTTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTG
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGG
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