CK935357

Overview
NameCK935357
Unique NameCK935357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.044e-33
Identity = 79/191 (41.36%), Postives = 109/191 (57.07%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRK-GGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 647
            R+ FV GNWK +G    +K +V+ LN                          L+  +  +  QN  +    GA+TGE SA ML ++   +VILGHSERRA+  E++  +  KV  AL  GL  I CVGETLE+RESG   +V+++Q  A+  +  I  + +VV+AYEPVWAIGTGK A+  QAQ+VHA +R
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLNAKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIR 192          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.044e-33
Identity = 79/191 (41.36%), Postives = 111/191 (58.12%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKG-GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 647
            R+  V GNWK NGT   V +++ +    +                       +      V AQ+C ++ G GA TGEVSA+ LV+L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP QAQEVHA +R
Sbjct:    2 RRPMVAGNWKMNGTRASVAELIESFRR-QALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIR 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.282e-33
Identity = 83/191 (43.46%), Postives = 105/191 (54.97%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 650
            R+  V GNWK NG+      +++ + +AE                       L  S   + AQ+      GA+TGEVS  ML+  +  +VI+GHSERRA   E+N+ V  K   ALS GL  I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  LR+
Sbjct:    2 RRKLVAGNWKMNGSLAANALLLAEI-KAEFGNPACDVAVCVPAPYLAQCLSLLSDSTIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRR 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIN (Triosephosphate isomerase OS=Leptospira interrogans GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.898e-33
Identity = 79/192 (41.15%), Postives = 108/192 (56.25%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 650
            RK  + GNWK N + +E   +  ++ E                         +L  S   V AQNC+     AFTGE S + L  + +  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RESG T+ V++ Q +   + I +  + N++LAYEPVWAIGTGKVATP+QAQEVH+ +RK
Sbjct:    2 RKTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSMVFPSTLHLENVSKILEGSSVIVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRK 193          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIC (Triosephosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.898e-33
Identity = 79/192 (41.15%), Postives = 108/192 (56.25%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 650
            RK  + GNWK N + +E   +  ++ E                         +L  S   V AQNC+     AFTGE S + L  + +  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RESG T+ V++ Q +   + I +  + N++LAYEPVWAIGTGKVATP+QAQEVH+ +RK
Sbjct:    2 RKTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSMVFPSTLHLENVSKILEGSSVIVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRK 193          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 75/190 (39.47%), Postives = 107/190 (56.32%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELR 647
            R+  + GNWK    ++E  + ++ L +                       K +  S+  +AA+N + +  GA+TGEVS +ML ++ + +VILGHSERR    ES++F+  KV   L  G+K I C+GE LE RE G T+ V+A+Q K     +S  D    ++AYEPVWAIGTGK ATP  AQE H E+R
Sbjct:    2 RRLVIAGNWKMYKNNKEAVETLTQLKDLTRDVKNVDIVIGAPFTCLSDAVKIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIR 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 80/193 (41.45%), Postives = 108/193 (55.96%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 647
            R+  + GNWK NGT++    + + + +                       + ++  S   + AQN  V   GAFTGE+S EML ++   +VILGHSERR L  E+N+ V  KVA A   GL  I CVGETLEQRE+  T+ V+ +Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE HA +R
Sbjct:    2 RRALIAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIR 194          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 84/188 (44.68%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 647
            RK  V GNWK N T  E   + + +  A                        L  S   + AQNC     GAFTGEVSA M+       VI GHSERR    E+N  V  KV +ALS GL+VI C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  QA+EVH  +R
Sbjct:    2 RKKIVVGNWKMNKTVTESLVLAAEVTAALGEGFTGCDVGIAPPFTALYEVGKLTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIR 189          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 84/195 (43.08%), Postives = 107/195 (54.87%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 650
            R+  V GNWK NG+       + +I S L  A                       ++      + AQ+    + GA+TGEVS  ML      +VI+GHSERRA   E+N+ +  K   AL+ GL  I CVGETL+QRE+G T +VVAEQ   +   I+  D   +V+AYEPVWAIGTGK ATPA AQEVHA LRK
Sbjct:    2 RRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGAAIA-----LGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRK 191          
BLAST of CK935357 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 3
Query:   84 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVEDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 647
            RK  V GNWK N   +E   +   LNEA                        ++ ++   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA  +E+ + +E+KV  AL+  LK I C+GE LE+RE+     VVA Q  ++ +    ++  ++LAYEPVWAIGTGK AT  QAQE+HA +R
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIR 191          
The following BLAST results are available for this feature:
BLAST of CK935357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_THICR4.044e-3341.36Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_PSEU54.044e-3341.36Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_HERAR5.282e-3343.46Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_LEPIN6.898e-3341.15Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_LEPIC6.898e-3341.15Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_FUSNN9.009e-3339.47Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_MAGSM1.537e-3241.45Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_CHLPD1.537e-3244.68Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_JANMA2.621e-3243.08Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_BACV82.621e-3241.58Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935357 ID=CK935357; Name=CK935357; organism=Citrus sinensis; type=EST; length=653bp
GGGGACAAACAGGGCGCTTATTTCTCGNNNNNNCGTCTCGCTTTCATCGC
CAAACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGG
CGGCAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTT
CTACATTGAATGAAGCTGAAGTCCCTTCTGAGGATGTTGTGGAGGTTGTT
GTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTC
TGATTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTT
TTACCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGG
GTCATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAACGA
TTTTGTTGAAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCA
TTGCTTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTG
GCTGTTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTG
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGG
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