CK935372
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.925e-24 Identity = 77/213 (36.15%), Postives = 105/213 (49.30%), Query Frame = 3 Query: 33 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 665 WF + ++LDGS PGD+GFDPLGL+ PE F E E+ + R+AML G + PE LG + + A G G W + T+ +E + FAE +R + +P +KY GG+ DP KD ++ KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+ Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDP----------LGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.543e-23 Identity = 85/228 (37.28%), Postives = 115/228 (50.44%), Query Frame = 3 Query: 15 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662 GADR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+A+ +G + PE+L + G+ E WF+ G I G ++ +P ++ ++ LMG E GR + YLGGS DP D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN Sbjct: 50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPET---FAKNREL---EVIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GRLGEVVDPLYLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.543e-23 Identity = 84/230 (36.52%), Postives = 114/230 (49.57%), Query Frame = 3 Query: 15 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662 G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G PE+L K+G E WF+ G I G +Y +P + +++ LMG E R N G G G + Y G S DP D + + K+KE+KNGRLA ++ G+FVQ +VTG GP QNL DHLA+P NN Sbjct: 38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.489e-23 Identity = 76/219 (34.70%), Postives = 103/219 (47.03%), Query Frame = 3 Query: 33 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 665 W + SYLDGS PGD+GFD LGL + P + E E+I+ R+AML G I PE LG + + A P G Y P T+ +E + F EH+R + + +KY GG+ DP KD ++ K+KE+KNGRLA+LAI+G+ V Q G GP +NL HLADP +NN+ Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAI-------PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 80/221 (36.20%), Postives = 104/221 (47.06%), Query Frame = 3 Query: 33 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662 W Q G PGDYG+D GLS DPE + E E+I+ R +LGA+G + PE+L I A WF+ G I G NY +P + +++ LMG E R N G G G + Y G + DP D + + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P NN Sbjct: 66 WDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20 Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 3 Query: 165 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662 EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 89 EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18 Identity = 80/260 (30.77%), Postives = 111/260 (42.69%), Query Frame = 3 Query: 21 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 668 DRPLW+ S +LDGSL GDYGFDP GL P F +P +G E+I+GR+AML +GA++ E L T + W G + +Y P TL +E+ ++G+ E FQ A S R Y G F LG + DP EK+ + +L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLAADP----------------EKTAQ-LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17 Identity = 73/216 (33.80%), Postives = 101/216 (46.76%), Query Frame = 3 Query: 57 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 677 SYL G PGDYG+D GLS T F + + L EVI+ R AM A+G I PE+L G E WF+ G I G +Y +P ++ ++ LMG E R LG DP Y +D ++ + K+KE+KNGRLAM ++ G+FVQ +V+ +NL DHL VNNN L+++ Sbjct: 71 SYLTGEFPGDYGWDTAGLSAYPET--FAKNREL---EVIHSRCAMSAALGCIFPELLSVMGQGFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP----------------LGEVTDPLYPGSFDSLGLA--EDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNV 261
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.066e-16 Identity = 73/219 (33.33%), Postives = 94/219 (42.92%), Query Frame = 3 Query: 30 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN--PGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 677 LWF + + + L G P D GFDPL L+ DP+ + EV +GR AML VG I PE+LGK AWF+ G D L + MA+ E+ R Q N G + R Y GF DP + + EVKNGRLA+ A+ G Q L TG P NL HLA+P+ N+ T+L Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYAR------MRVAEVFHGRLAMLCTVGCIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSY-PGF--------DPL---------------NLTTDYTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL 359
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15 Identity = 65/193 (33.68%), Postives = 94/193 (48.70%), Query Frame = 3 Query: 60 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 593 +LDGSLPGD+GFDPLGL DP F+ KW E+I+GR+AML +G +G+A T + WF+ G P A +++ TL ++ LMG+ E +R+ D WA P S + F G + Y GG D ++ KL E+K+ RLAMLA+L ++ + Sbjct: 75 WLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248 The following BLAST results are available for this feature:
BLAST of CK935372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935372 ID=CK935372; Name=CK935372; organism=Citrus sinensis; type=EST; length=846bpback to top |