CK935372

Overview
NameCK935372
Unique NameCK935372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:243..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.925e-24
Identity = 77/213 (36.15%), Postives = 105/213 (49.30%), Query Frame = 3
Query:   33 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 665
            WF  +   ++LDGS PGD+GFDPLGL+  PE    F E       E+ + R+AML   G + PE LG    +  +   A    G     G    W +  T+  +E   + FAE +R  +  +P           +KY GG+ DP              KD    ++ KLKE+KNGRLAMLA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDP----------LGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.543e-23
Identity = 85/228 (37.28%), Postives = 115/228 (50.44%), Query Frame = 3
Query:   15 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662
            GADR L+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+A+   +G + PE+L + G+   E    WF+ G  I   G  ++  +P          ++  ++ LMG  E             GR   +    YLGGS DP               D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct:   50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPET---FAKNREL---EVIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GRLGEVVDPLYLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.543e-23
Identity = 84/230 (36.52%), Postives = 114/230 (49.57%), Query Frame = 3
Query:   15 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662
            G +R  W   ++   + +YL G  PGDYG+D  GLS DPE    + E       E+I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLA  ++ G+FVQ +VTG GP QNL DHLA+P  NN
Sbjct:   38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.489e-23
Identity = 76/219 (34.70%), Postives = 103/219 (47.03%), Query Frame = 3
Query:   33 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 665
            W   +   SYLDGS PGD+GFD LGL + P     + E       E+I+ R+AML   G I PE LG    +  +   A        P G   Y   P       T+  +E   + F EH+R  +  +            +KY GG+ DP              KD    ++ K+KE+KNGRLA+LAI+G+ V Q    G GP +NL  HLADP +NN+
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAI-------PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 80/221 (36.20%), Postives = 104/221 (47.06%), Query Frame = 3
Query:   33 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662
            W    Q      G  PGDYG+D  GLS DPE    + E       E+I+ R  +LGA+G + PE+L     I    A  WF+ G  I   G  NY  +P  +          +++ LMG  E  R     N G  G     G +  Y G + DP               D  +  + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P  NN
Sbjct:   66 WDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 3
Query:  165 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 662
            EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   89 EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 80/260 (30.77%), Postives = 111/260 (42.69%), Query Frame = 3
Query:   21 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 668
            DRPLW+    S  +LDGSL GDYGFDP GL  P     F                                +P    +G       E+I+GR+AML  +GA++ E L         T + W   G +      +Y   P      TL  +E+ ++G+ E   FQ  A   S  R Y  G F   LG + DP                EK+ +  +L E+K+ RLAM+A LG+ VQ   TG GP  N   HL+DP++  ++
Sbjct:   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLAADP----------------EKTAQ-LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 73/216 (33.80%), Postives = 101/216 (46.76%), Query Frame = 3
Query:   57 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 677
            SYL G  PGDYG+D  GLS    T  F + + L   EVI+ R AM  A+G I PE+L   G    E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP Y            +D ++  + K+KE+KNGRLAM ++ G+FVQ +V+     +NL DHL   VNNN L+++
Sbjct:   71 SYLTGEFPGDYGWDTAGLSAYPET--FAKNREL---EVIHSRCAMSAALGCIFPELLSVMGQGFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP----------------LGEVTDPLYPGSFDSLGLA--EDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNV 261          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.066e-16
Identity = 73/219 (33.33%), Postives = 94/219 (42.92%), Query Frame = 3
Query:   30 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN--PGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 677
            LWF + +  + L G  P D GFDPL L+ DP+          +   EV +GR AML  VG I PE+LGK          AWF+ G            D   L  + MA+    E+ R Q   N   G + R Y  GF        DP                  +    +  EVKNGRLA+ A+ G   Q L TG  P  NL  HLA+P+  N+ T+L
Sbjct:  189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYAR------MRVAEVFHGRLAMLCTVGCIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSY-PGF--------DPL---------------NLTTDYTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL 359          
BLAST of CK935372 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 65/193 (33.68%), Postives = 94/193 (48.70%), Query Frame = 3
Query:   60 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 593
            +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F    G + Y GG                   D   ++  KL E+K+ RLAMLA+L ++ +
Sbjct:   75 WLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248          
The following BLAST results are available for this feature:
BLAST of CK935372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB121_HORVU6.925e-2436.15Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB48_MAIZE1.543e-2337.28Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_CHLRE1.543e-2336.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB11_SOLLC4.489e-2334.70Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2_DUNSA5.863e-2336.20Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_SOYBN1.222e-2038.29Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4A_ARATH5.678e-1830.77Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB2_MALDO2.158e-1733.80Chlorophyll a-b binding protein AB10, chloroplasti... [more]
LH18_EUGGR9.066e-1633.33Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4_SPIOL2.020e-1533.68Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_D12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935372 ID=CK935372; Name=CK935372; organism=Citrus sinensis; type=EST; length=846bp
GGGCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAA
AGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCC
ACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAAT
GGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCT
GTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCA
AGAAACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAA
CATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCA
CTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGG
ATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGTT
CCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTT
GGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAA
TGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTG
TTACAGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGATCCT
GTCAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTT
CTTGTTCATTGCTTGGAATTATATATTCCAAGCCTTGTCATCCCCCACTC
TGTTCTATTCTACTTTCCCCATTGTAAAATTATCTATGTGAAAAGTGAAT
GTAACTTGGCGGAAATGACATGTTAATNNCTGAAAAAAAAAAAAAA
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