CK935377

Overview
NameCK935377
Unique NameCK935377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 55/172 (31.98%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  161 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEG------LYEGLDWLSNNIA 649
            +++ ++MVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D  R+ E ++ +  +L    +    +LV ANKQD   A+  A++ + L L  L   H     I+   A  G G      + +GL WL + IA
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 191          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 50/175 (28.57%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 646
            KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D +R+VE++ EL+ ++ ++ + +  +L+  NK D  +A++  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct:   23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 50/175 (28.57%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 646
            KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D +R+VE++ EL+ ++ ++ + +  +L+  NK D  +A++  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct:   23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  161 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPN--------AMNAAEIT--DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 640
            K  +IL +GLD AGKTT+L  LK G + + +PT     E +   NI F  +D+GG +  R LW+ Y+ +   +++++DS+ ++R VE++ EL  +L+ DEL +   L+  NK D+ N        ++   + T   K  L+ +R    ++ S       G  EG  WL+N
Sbjct:   19 KNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIGNTSEEKFRASLGLTQTTGKGKTTLNGVRPIEVFMCS--VVKRYGYAEGFRWLAN 186          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 48/175 (27.43%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 646
            KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D  R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: ARL15_MOUSE (ADP-ribosylation factor-like protein 15 OS=Mus musculus GN=Arl15 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  155 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 655
            A+ E  ++ +GL  +GKT++L +L        + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  + +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q       + L +    L N +  K
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSELCSESPENVVSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDVDTLKDSFSQLINLLEEK 197          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 50/172 (29.07%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  155 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL------------HSLRQRHWYIQSTCATSGEGLYEGLDWL 634
            A K+ +++ +GLD AGKTT+L+ LK   I   +PT+    E +    ISFT +D+GG  + R +W+ YF     ++F++D  D  R+ E+R EL  +L ++++    +L+  NK D P A++  ++  +L +            + +  R   +        +G  EG+ WL
Sbjct:   18 ANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWL 189          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 48/175 (27.43%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 646
            KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D  R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 48/175 (27.43%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 646
            KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D  R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CK935377 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 48/175 (27.43%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRNRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 646
            KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D  R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
The following BLAST results are available for this feature:
BLAST of CK935377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
AR13B_MOUSE2.429e-1931.98ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
SAR1A_PONAB3.173e-1928.57GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN3.173e-1928.57GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_DICDI7.068e-1932.35GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1B_MOUSE9.231e-1927.43GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
ARL15_MOUSE9.231e-1932.54ADP-ribosylation factor-like protein 15 OS=Mus mus... [more]
SAR1_CAEEL1.206e-1829.07GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1B_HUMAN1.206e-1827.43GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR1.206e-1827.43GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1B_RAT1.575e-1827.43GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935377 ID=CK935377; Name=CK935377; organism=Citrus sinensis; type=EST; length=741bp
GGGGATATACATATTTCTGCGTTGTTGTTAAGCTAATAAGCTTCGTCCTC
CACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGTTCTCTGAAGATAGTGA
TCCCCAGCTGGAAGAATGGGGCTGACTTTCACAAAGCTGTTCAGCCGGCT
CTTTGCCAAGAAAGAGATGCGAATTCTAATGGTTGGTCTTGATGCTGCTG
GTAAGACCACTATCTTGTACAAGCTCAAGCTTGGAGAGATTGTCACCACA
ATTCCTACCATTGGGTTTAATGTGGAGACCGTTGAATATAAAAACATCAG
TTTCACTGTGTGGGATGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGA
GGCATTATTTCCAGAACACTCAAGGTCTCATTTTTGTTGTGGACAGCAAT
GACAGAAACCGTATTGTAGAAGCAAGGGATGAATTGCATAGGATGTTGAA
TGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTATTTGCTAACAAACAGG
ATCTTCCAAATGCAATGAATGCTGCTGAGATTACTGATAAGCTTGGCCTC
CACTCCCTCAGGCAGCGCCACTGGTACATCCAGAGCACCTGTGCAACCTC
TGGTGAGGGTCTTTATGAAGGTCTGGATTGGCTCTCCAACAACATCGCTA
ACAAGGCCTGAAGCTGTTAAGATCTTTTTGCGGACTGGCAATTCTGGATG
CAGGGGTGAATATTATCTATTTTTTTTCTTTTTAACCCTTT
back to top