CK935378

Overview
NameCK935378
Unique NameCK935378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935378_ssr821 microsatellite CK935378_ssr821:821..840. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9272 contig Csv1_Contig9272:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  101 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            E RYRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAKTNFP
Sbjct:   24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.536e-14
Identity = 44/101 (43.56%), Postives = 50/101 (49.50%), Query Frame = 2
Query:   26 PLFKMAPRDKLDKPSSNPNPNSKDMEI----------RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNEIL 298
            PL K          S N   +SKD  +          RYRGVR+RPWGRYAAEIRDP  K R WLGTFDT                GAKA+TNF  P  ++
Sbjct:   19 PLTKFFTEPTASPVSRNRKLSSKDTTVTIAGAGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVI 119          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 2
Query:  104 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 286
            IRYRGVR+RPWGRYAAEIRDP  K R WLGTFDT                G KA+TNF  P
Sbjct:   56 IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYP 116          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 2
Query:   47 RDKLDKPSSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            + +LDK   +     +     YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G KAK NFP
Sbjct:   18 KQELDKSDQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 40/92 (43.48%), Postives = 46/92 (50.00%), Query Frame = 2
Query:    2 GRANKQLAPLFKMAPRDKLDKPSSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 277
            G  N       K + R K  +P   P P     EI+Y GVR+RPWGRYAAEIR+P  K R WLGTFDT                G  A+TNF
Sbjct:    5 GNLNAGSCSRSKKSHRQKQQQPQ--PQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   89 SKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNEIL 298
            +++ + RYRGVR+RPWG++AAEIRDP +  RVWLGTFDT                G KAK NFP    IL
Sbjct:   70 AREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRIL 139          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  107 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            +YRGVR+RPWG++AAEIRDP K TRVWLGTF+T                G+KAK NFP
Sbjct:   60 KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 2
Query:   92 KDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            K    RY+G+R+RPWGR+AAEIRDP K  RVWLGTF+T                GAKAK NFP
Sbjct:   19 KKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFP 81          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 2
Query:   89 SKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            S   +  YRGVR+RPWG++AAEIRDP K  RVWLGTFDT                G KAK NFP
Sbjct:   63 SNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   77 PNPNSKDMEI----RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            P P ++D  +     YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G+KAK NFP
Sbjct:   77 PAPPTQDQGLLRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
The following BLAST results are available for this feature:
BLAST of CK935378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ERF83_ARATH3.832e-1463.33Ethylene-responsive transcription factor 7 OS=Arab... [more]
ESR1_ARATH6.536e-1443.56Ethylene-responsive transcription factor ESR1 OS=A... [more]
ESR2_ARATH1.610e-1259.02Ethylene-responsive transcription factor ESR2 OS=A... [more]
EF113_ARATH2.103e-1244.87Ethylene-responsive transcription factor ERF113 OS... [more]
ERF87_ARATH2.746e-1243.48Ethylene-responsive transcription factor ERF087 OS... [more]
EF110_ARATH2.746e-1250.00Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH3.587e-1256.90Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF73_ARATH4.684e-1253.97Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH6.118e-1253.13Ethylene-responsive transcription factor ERF112 OS... [more]
EF115_ARATH1.044e-1148.61Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_C12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935378 ID=CK935378; Name=CK935378; organism=Citrus sinensis; type=EST; length=848bp
GGGAAGAGCTAACAAACAACTTGCTCCTCTGTTCAAAATGGCTCCGAGAG
ATAAGCTCGACAAACCATCCTCTAACCCGAATCCGAATTCGAAGGATATG
GAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTACGCCGC
CGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGCACCTTCG
ACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCGTGAGTTC
CGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAATTCTTGG
CACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCATCCTCTC
CTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACAGCTAAAC
CTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTCGCCAC
GGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGTACTGTTG
CGACTCACCGTGATGCACGCCGTGTTGGTTTTTATCCCGGCGGGACCCAG
AGCGACTCCGATTCGTCATCTGTCGTCGTTGATTACGATCCTCGTTCGTC
TGAGAGAAGATTGATTGCTCGTGATCTTGATCTTAATCTCCCTCCTCCAC
CTGAAGTGGCTTGAGTATTTGGACTGAAGCTAATGCTGACGTGTACGGCG
ATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCGATCTTCG
TATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCACGTTGTT
TTTAACTGCTGCCGTTAGAAATATATATATATATATATATGTTTAATG
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