CK935378

Overview
NameCK935378
Unique NameCK935378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = 2
Query:   65 PSSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            P++ P     D    YRGVR+RPWG+YAAEIRDP KK  RVWLGTFDT                G+KA  NFP
Sbjct:   58 PTTAPVVQENDQR-HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 2
Query:  107 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 286
            +YRGVR+RPWG++AAEIRDP  +TR+WLGTF T                G KA TNF TP
Sbjct:  104 KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 2
Query:  110 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G+KAK NFP
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 2
Query:  104 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 286
            ++YRGVR+RPWG++AAEIRDP  +TR+WLGTF T                G  A+TNF TP
Sbjct:   97 VKYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTP 157          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 33/58 (56.90%), Postives = 36/58 (62.07%), Query Frame = 2
Query:  107 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            RYRGVR+RPWG++AAEIRDP K  RVWLGTFD                 G KAK NFP
Sbjct:  184 RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP 241          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 2
Query:   92 KDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            K+ +  YRGVR+RPWG++AAEIRDP + TRVWLGTF+T                G +AK NFP
Sbjct:  130 KNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 2
Query:  107 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 286
            ++RGVR+RPWG++AAEIRDP ++ RVWLGTFDT                G  A+ NFP P
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPP 145          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  110 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            YRG+RKRPWG++AAEIRDP K  RVWLGTF+T                G KAK NFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  107 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            +YRG+R+RPWG++AAEIRDP K +R WLGTFDT                G KAK NFP
Sbjct:  127 QYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 2
Query:   62 KPSSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            K S +  P  K M+  YRGVR+RPWG++AAEIRDP K   RVWLGT++T                G+KAK NFP
Sbjct:   78 KASGSHAPRQKGMQ--YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
The following BLAST results are available for this feature:
BLAST of CK935378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
EF105_ARATH1.780e-1150.68Ethylene-responsive transcription factor ERF105 OS... [more]
CRF6_ARATH1.780e-1153.33Ethylene-responsive transcription factor CRF6 OS=A... [more]
EF114_ARATH2.325e-1156.14Ethylene-responsive transcription factor ERF114 OS... [more]
CRF5_ARATH2.325e-1150.82Ethylene-responsive transcription factor CRF5 OS=A... [more]
ABR1_ARATH2.325e-1156.90Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF109_ARATH3.036e-1150.79Ethylene-responsive transcription factor ERF109 OS... [more]
CRF1_ARATH3.036e-1150.00Ethylene-responsive transcription factor CRF1 OS=A... [more]
RAP23_ARATH3.965e-1156.14Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH3.965e-1153.45Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF99_ARATH3.965e-1148.65Ethylene-responsive transcription factor 13 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_C12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935378 ID=CK935378; Name=CK935378; organism=Citrus sinensis; type=EST; length=848bp
GGGAAGAGCTAACAAACAACTTGCTCCTCTGTTCAAAATGGCTCCGAGAG
ATAAGCTCGACAAACCATCCTCTAACCCGAATCCGAATTCGAAGGATATG
GAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTACGCCGC
CGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGCACCTTCG
ACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCGTGAGTTC
CGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAATTCTTGG
CACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCATCCTCTC
CTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACAGCTAAAC
CTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTCGCCAC
GGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGTACTGTTG
CGACTCACCGTGATGCACGCCGTGTTGGTTTTTATCCCGGCGGGACCCAG
AGCGACTCCGATTCGTCATCTGTCGTCGTTGATTACGATCCTCGTTCGTC
TGAGAGAAGATTGATTGCTCGTGATCTTGATCTTAATCTCCCTCCTCCAC
CTGAAGTGGCTTGAGTATTTGGACTGAAGCTAATGCTGACGTGTACGGCG
ATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCGATCTTCG
TATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCACGTTGTT
TTTAACTGCTGCCGTTAGAAATATATATATATATATATATGTTTAATG
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