CK935387

Overview
NameCK935387
Unique NameCK935387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.210e-67
Identity = 123/219 (56.16%), Postives = 150/219 (68.49%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FPGFG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIIN
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIIN 266          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 252.292 bits (643), Expect = 2.089e-66
Identity = 123/233 (52.79%), Postives = 153/233 (65.67%), Query Frame = 1
Query:   85 GSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+N
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVN 274          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.729e-66
Identity = 116/201 (57.71%), Postives = 144/201 (71.64%), Query Frame = 1
Query:  151 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+N
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVN 277          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.354e-65
Identity = 117/204 (57.35%), Postives = 143/204 (70.10%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++   +S            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIIN
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIIN 222          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.017e-65
Identity = 117/204 (57.35%), Postives = 142/204 (69.61%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++   A+            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIIN
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIIN 222          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.017e-65
Identity = 122/228 (53.51%), Postives = 152/228 (66.67%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  QT HETTGGW  AP G ++WGYC+ ++ +P S            PG +YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+N
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVN 286          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.940e-65
Identity = 113/197 (57.36%), Postives = 144/197 (73.10%), Query Frame = 1
Query:  160 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+                YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI N+W PS +D ++GRLPGYG+ TNIIN
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP-------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIIN 209          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.778e-65
Identity = 111/202 (54.95%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  145 TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF AQT HETTGGW  AP G YAWGYC++ + +                 +YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIIN
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIIN 276          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.688e-63
Identity = 113/225 (50.22%), Postives = 145/225 (64.44%), Query Frame = 1
Query:   85 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSP-ASSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            G    C      G      G  G  +  I+SR +F+ +L +RNDA CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +    SD              +YYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIIN
Sbjct:   54 GCQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIIN 278          
BLAST of CK935387 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.830e-62
Identity = 114/205 (55.61%), Postives = 143/205 (69.76%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIINEWKPSANDVNAGRLPGYGLTTNIIN 750
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYC++RQ+  +               +YYGRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIIN
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD--------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIIN 207          
The following BLAST results are available for this feature:
BLAST of CK935387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_SOLTU4.210e-6756.16Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_HORVU2.089e-6652.7926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE2.729e-6657.71Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU1.354e-6557.3526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE3.017e-6557.35Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_ORYSJ3.017e-6553.51Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ3.940e-6557.36Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIX_PEA8.778e-6554.95Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_ORYSJ3.688e-6350.22Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI1.830e-6255.61Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_C03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935387 ID=CK935387; Name=CK935387; organism=Citrus sinensis; type=EST; length=750bp
GGGGGATATCATAACTCTTGCTTTCAAATGAGGCTCATTGGGTCCTTACT
AATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATT
GTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGAT
GGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCT
TCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGA
AATGAAACCATGCGTAAAAGAGAAATTGCCGCCTTTTTTGCCCAAACTGG
CCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTT
GGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGT
TATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCC
AATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGG
GGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTACTA
TCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCC
ATCGTGCCACGAAGTCATTATCAACGAATGGAAACCATCAGCAAATGACG
TAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAAC
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