CK935388

Overview
NameCK935388
Unique NameCK935388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_BORBR (S-adenosylmethionine synthetase OS=Bordetella bronchiseptica GN=metK PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 106/206 (51.46%), Postives = 134/206 (65.05%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEI 720
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP ++VA ET   T +V++ GEITT A VDY ++ RDT R IG+ + + G+D   C VLV  ++QSPDIAQGV     +  ED    GAGDQG MFGYA DETP+ MP     A +L  R +E+RK+    WLRPD K+QVT  Y +      P  V TV++STQH   ++   I
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV----DRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASI 203          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_TRIEI (S-adenosylmethionine synthetase OS=Trichodesmium erythraeum (strain IMS101) GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 103/201 (51.24%), Postives = 134/201 (66.67%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQH 693
            +LFTSESV EGHPDK+CDQISD ++DA L QDP+S+VA E    T +V++ GEITTKA+V+Y ++ R     IG+V  + G  AD C VLV +++QS DIAQGV      R        + +GAGDQG MFG+A +ETPE MPL   LA ++  +LT VRK     +LRPDGK+QVT+ Y +      PV + T+LISTQH
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTIIDAILAQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYIELARKKIADIGYVHAENGFSADSCSVLVALDEQSADIAQGVDKAQETRELLSEEELDAVGAGDQGLMFGFACNETPELMPLPISLAHRVCRQLTAVRKTGQLPYLRPDGKSQVTITYEDGR----PVGIDTILISTQH 201          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_THICR (S-adenosylmethionine synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 104/206 (50.49%), Postives = 136/206 (66.02%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEI 720
            M T +FTSESV+EGHPDK+ DQISDA+LDA ++QDP+++VACET  KT MVM+ GEITT A VD E++VR     IG+   D+G D + C VL +I +QSP+IAQGV  +      + GAGDQG MFGYA++ET   MP     A +L  +  E+RK     WLRPD K+QVT+ Y +      PV V  V++STQH   V N ++
Sbjct:    1 MTTTVFTSESVSEGHPDKIADQISDAMLDAIMKQDPKARVACETFVKTGMVMLGGEITTSAWVDQEELVRQVVNDIGYNHGDLGFDGETCAVLSSIGKQSPEIAQGVDEY---EDHEQGAGDQGLMFGYASNETDVLMPAPIYFAHRLMEKQAELRKAGKLDWLRPDAKSQVTLRYEDGQ----PVAVDAVVLSTQHSPEVDNKDL 199          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_POLSQ (S-adenosylmethionine synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 102/203 (50.25%), Postives = 139/203 (68.47%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEI 720
            + FTSESV+EGHPDK+ DQISDA+LDA L QDP ++VA ET   T +V++ GEITT A VDY ++ R+T R IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MP+   L+ +L  R +++R++   +WLRPD K+QVT+ Y +      P  + TV++STQHDE ++ +++
Sbjct:    5 YFFTSESVSEGHPDKVADQISDAILDAILAQDPTARVAAETLCNTGLVVLAGEITTHANVDYIQVARNTLREIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDKAHDD-GLDQGAGDQGLMFGYACDETSELMPMPIHLSHRLVERQSQLRRDGRLNWLRPDAKSQVTLRYVDGK----PDSIDTVVLSTQHDEEISLEKL 202          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_POLNS (S-adenosylmethionine synthetase OS=Polynucleobacter necessarius (strain STIR1) GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 102/203 (50.25%), Postives = 139/203 (68.47%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEI 720
            + FTSESV+EGHPDK+ DQISD++LDA L QDP ++VA ET   T +V++ GEITT A VDY ++ R+T R IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R +++R++   +WLRPD K+QVT+ Y +      P  + TV++STQHDE ++ +++
Sbjct:    5 YFFTSESVSEGHPDKVADQISDSILDAILAQDPTARVAAETLCNTGLVVLAGEITTNANVDYIQVARNTLREIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDKAHDD-GLDQGAGDQGLMFGYACDETAELMPLPIHLSHRLVERQSQLRRDGRLNWLRPDAKSQVTLRYVDGK----PDSIDTVVLSTQHDEDISLEKL 202          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_CORJK (S-adenosylmethionine synthetase OS=Corynebacterium jeikeium (strain K411) GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 109/216 (50.46%), Postives = 132/216 (61.11%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED------------IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTND 714
            M   LF+SESV EGHPDK+CD ISD +LDA + +DPE++VA ET   T +V V GEI T   V+   +VR T   IGF S D+G D   C V V I +QS +IAQGV      R  D            +GAGDQG MFGYAT+ETPE+MPL   LA +L  RLTEVRK      LRPDGKTQVT  Y   +    PVR+ TV++STQHD  +  +
Sbjct:    1 MSLRLFSSESVTEGHPDKICDAISDKILDALIAKDPEARVAVETVVTTGLVHVVGEIRTTTYVEIPALVRKTLLEIGFNSSDMGFDGSTCGVSVAIGEQSQEIAQGVDTALEHRSHDAEGGAELDEIDRLGAGDQGLMFGYATNETPEYMPLPIALAHRLSRRLTEVRKKGIVPHLRPDGKTQVTFAY---DAEGAPVRLDTVVVSTQHDAGIEQE 213          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_BUCAP (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 103/204 (50.49%), Postives = 137/204 (67.16%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTND 714
            M  +LFTSESV+EGHPDK+ DQISDA+LD  ++QD +++VACET  KT MV++ GEITT A VD E+I R+T  +IG+++ + G DA+ C VL  I +QSPDI QGV       P + GAGDQG +FGYAT+ET   MP     A  L  + +E+RK +   WLRPD K+QVT +Y N       + + TV+ STQH E++T D
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEIIKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRNTINNIGYINSETGFDANSCAVLSTIGKQSPDITQGVD---RCNPLEQGAGDQGIIFGYATNETEVLMPAPITYAHLLVKKQSELRKKNILHWLRPDAKSQVTFKYKNGR----IIGIDTVVFSTQHKESITQD 197          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_WIGBR (S-adenosylmethionine synthetase OS=Wigglesworthia glossinidia brevipalpis GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 100/206 (48.54%), Postives = 139/206 (67.48%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEI 720
            M  +LFTSESV+EGHPDK+ DQISD +LDA L QD +++VACET  KT MV+V GE+ + AK+D E+++R+T + IG+++ ++G DA+ C +L NI +QS DI +G++      P   GAGDQG +FGYAT+ET  FMP     A KL  R +EVRK +   WLRPD K+Q+T  Y N       V + TV+IS+QH E +   ++
Sbjct:    1 MNQYLFTSESVSEGHPDKIADQISDTILDAILTQDKKARVACETYIKTGMVLVGGEVNSYAKIDIEELIRNTIKDIGYINSNMGFDANSCAILNNISKQSKDIEKGLN---QLDPYMQGAGDQGIIFGYATNETETFMPAPITYANKLMIRQSEVRKKNILPWLRPDAKSQITFIYENKK----IVGIDTVIISSQHSEEINLSDL 199          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 109/217 (50.23%), Postives = 136/217 (62.67%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHF--------TKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEIAAD 729
            M   LFTSESV EGHPDK+ DQISDA+LDA +E DP  +VA ET   T +V+V GEITT   VD  ++VR T   IG+     G DA+ C VL ++++QS DIA GV   F         K  + IGAGDQG MFGYA++ET   MP+   LA+K+  RL EVRK     +LRPDGKTQVTVEY +      P+RV TV++S QH   V++  I  D
Sbjct:    1 MARTLFTSESVTEGHPDKVADQISDAILDAIMELDPYGRVAAETIVTTGLVLVAGEITTNCYVDIPRLVRSTIEDIGYTRAKYGFDAETCAVLTSLDEQSGDIALGVDRAFEAKKGEMDDKELDAIGAGDQGMMFGYASNETAVLMPMPIYLASKMAERLGEVRKEGIIPYLRPDGKTQVTVEYED----YKPLRVTTVVVSAQHHPEVSSATIEKD 213          
BLAST of CK935388 vs. ExPASy Swiss-Prot
Match: METK_PSYWF (S-adenosylmethionine synthetase OS=Psychrobacter sp. (strain PRwf-1) GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 101/202 (50.00%), Postives = 135/202 (66.83%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGXXVPVRVHTVLISTQHDETVTNDEI 720
            LFTSESV+EGHPDK+ DQISDA+LDA + +D  ++VACET  KT  V++ GEI+T A +D E+IVRDT  SIG+   D+G D + C V+  I +QSP+IAQGV       PED GAGDQG MFGYA++ET   MP     A +L  R +E+R++    WLRPD K QVT++Y N      P  +  V++STQHD  ++  ++
Sbjct:    6 LFTSESVSEGHPDKMADQISDALLDAIMREDLHARVACETLVKTGAVVLAGEISTTANIDIERIVRDTVNSIGYNHSDLGFDGETCAVINMIGKQSPEIAQGVD---RMNPEDQGAGDQGLMFGYASNETEVLMPAPIEFAHRLMERQSELRRSGELKWLRPDAKAQVTLKYTN----GTPSAIDAVVLSTQHDPDISQADL 200          
The following BLAST results are available for this feature:
BLAST of CK935388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BORBR1.686e-4951.46S-adenosylmethionine synthetase OS=Bordetella bron... [more]
METK_TRIEI2.201e-4951.24S-adenosylmethionine synthetase OS=Trichodesmium e... [more]
METK_THICR2.201e-4950.49S-adenosylmethionine synthetase OS=Thiomicrospira ... [more]
METK_POLSQ2.201e-4950.25S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_POLNS2.201e-4950.25S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_CORJK2.201e-4950.46S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_BUCAP2.201e-4950.49S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_WIGBR2.875e-4948.54S-adenosylmethionine synthetase OS=Wigglesworthia ... [more]
METK_SYNWW2.875e-4950.23S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_PSYWF2.875e-4950.00S-adenosylmethionine synthetase OS=Psychrobacter s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_C04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935388 ID=CK935388; Name=CK935388; organism=Citrus sinensis; type=EST; length=731bp
GGGGGCCCAAACTCAACTGTGTTCCGCTTTGCTATTGAGGTCTGGTCTTA
AGTCTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATA
AGATGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGATGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGATGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCTGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCCCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTG
CTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCC
GATGGGAAGACCCAGGTCACTGTTGAGTACTACAATGACAATGGTGNNNT
GGTCCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGA
CTGTCACAAATGATGAAATTGCTGCTGACCT
back to top