CK935392

Overview
NameCK935392
Unique NameCK935392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:21..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935392 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 50/160 (31.25%), Postives = 72/160 (45.00%), Query Frame = 2
Query:  224 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATD 703
            EL   +F RA++AEF+A            + + S               +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA++G  ++         R     N L +  + G  +  E+  T  LV  +F++TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI-TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTD 150          
BLAST of CK935392 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  368 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFSAT-DP 706
            G++ +A A    + V V     ISGGH+NPAVTFG  +  +VSLVRAV+Y VAQ LGA++   L++           GG        ++GVG    +  E + TF L+Y  ++   DP
Sbjct:   61 GLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLAT--------GGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDP 170          
BLAST of CK935392 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 2
Query:  362 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYY----TRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATD 703
            G+G +G++ AFG  +  ++Y    ISGGH NPAVT GL+   +   V  + Y+++Q +G I    ++            T  G  +N   +    G+S    + AEI+ T + +  +  ATD
Sbjct:   33 GIGFVGVSLAFGLTVLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHSPGGFSLQSAIVAEIVLTAIFLIVIIGATD 154          
BLAST of CK935392 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  362 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGAN-----ELADGYSTGVGLAAEIIGTFVLVYTVFSATD 703
            G+G  G++ AFG  +  + +    ISG HINPAV+ GL+ A++      + Y+ AQ LG I+G G++   A  K+ ++  GG A+         GY+    L  E++ TF+ +  +  +TD
Sbjct:   35 GIGFAGVSLAFGLTLLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD 155          
The following BLAST results are available for this feature:
BLAST of CK935392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
AQP2_MOUSE3.855e-1131.25Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP31_MAIZE5.034e-1137.29Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQPZ_PHOLL5.034e-1129.51Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
AQPZ_GLOVI5.034e-1132.23Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_C08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935392 ID=CK935392; Name=CK935392; organism=Citrus sinensis; type=EST; length=706bp
GGGATACCAAAANNNAGCTACAAAAAGAAAAAGNNNAAGAAAAAGGAAAN
NNNNNNTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCT
GTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGG
GGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGC
CGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGA
GCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGT
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGT
GTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGG
TGGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCG
CCGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACT
GATCCC
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