CK935396

Overview
NameCK935396
Unique NameCK935396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 3
Query:   96 FKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            FKRYVE+ RV LV  G+  GKL VIVD++D  RAL+D+P  +  R  + +  + LT I + + R  R   + +  +  DV NKW +S+W +KL  +K R+ LNDFDRF +M  K ++   V   +AK  K
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  102 RYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 470
            R VE+ RV L+  G+  GKL  IV+++DQ + L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  102 RYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 470
            R VE+ RV L+  G+  GKL  IV+++DQ + L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 491
            MPF+R+V+  R+A  + G   G+LV IVDV+DQNR LVD P   + R +     L LT  +I        + + +A  ++D+  +W+ S W  K     +R++LNDFDRFKL  AK ++  L+      LKK   A
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKA 136          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 3
Query:   96 FKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKL 473
            F  +VEI RV ++NYG+   K  VI+DVLDQNRALV  P   + R  +NFK ++LT +K++I R  R  +LI A++ AD+  K    S  +K+  +  ++   DF+RFK  L + K    V  E+ KL
Sbjct:    5 FSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_DROVI (60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            MPF+R+V+  R+A  + G   G+LV IVDV+DQNR LVD P   + R +     L LT  +I        + + +A   +D+  +W+ S W  K     +R+ LNDFDRFKL  AK ++  L+      LKK
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKK 132          
The following BLAST results are available for this feature:
BLAST of CK935396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL14_SCHPO2.264e-1941.5460S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14B_YEAST1.051e-1636.8060S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14A_YEAST1.373e-1636.8060S ribosomal protein L14-A OS=Saccharomyces cerev... [more]
RL14_DROME1.793e-1637.5060S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14_DICDI2.342e-1640.6360S ribosomal protein L14 OS=Dictyostelium discoid... [more]
RL14_DROVI1.518e-1537.8860S ribosomal protein L14 OS=Drosophila virilis GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935396 ID=CK935396; Name=CK935396; organism=Citrus sinensis; type=EST; length=713bp
GGGGGGACCTGGGGAACCCTAAATCGAAGCCTCTTGCCTCATTCATTCAT
CTCCTCGCTCCTCCGGCAGAGCCTTGAATATCTTCGAAAATGCCGTTCAA
GAGGTACGTGGAGATAAGAAGAGTTGCTCTCGTTAATTACGGCAAGGACT
ATGGGAAGCTTGTGGTCATCGTCGATGTCCTTGATCAAAACAGGGCTCTT
GTTGATGCCCCTGATATGGTGAGGAGCCAAATGAACTTCAAGAGGCTTTC
TCTCACGGATATTAAGATTGACATCAATCGAGTTCCCAGGAAGAAGTCTT
TGATTGAAGCCATGGAGAAGGCTGATGTGAATAACAAATGGGAAAACAGC
TCCTGGGGCAGGAAGCTGATTGTCCAGAAAAGGAGAGCGGCACTGAATGA
TTTTGATAGGTTCAAGCTCATGTTGGCAAAGATCAAGAAGGGTGGACTTG
TTCGACAGGAGCTTGCAAAACTCAAGAAGGAGAATGCAGCATAGAATTTC
TCTCTTGTGTTCCCCTTTCTGGTTTTTAGTTCTTACAGCTTCAATTTGAT
TCTATTAATGTATTGATTAATATGAGAAAACATCAGCTTGGCGTTTTTGG
GTTAATTGTTATTTGGACAGAATTTTTAGATATTTTCGTAATGTCCTTTC
TGTTATAATCTGATCTCAAGCTTTGTTGTTCGGTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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