CK935406

Overview
NameCK935406
Unique NameCK935406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    7 HCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EE++KTGKN+WFF KLRF
Sbjct:   40 HALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.758e-22
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GH +VAG+++YP KV +   AK+ AK+SRVK F+K++NY HLMPTRY L++D LK +V+  +     ++  A K  K   EE+++TGK+ WFFT LRF
Sbjct:   39 GHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.603e-22
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    7 HCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            H +VAGI++ P KV +K  AKK  K+++VK FVKLVNY HLMPTRY+LDV+  K  V++++L+   ++  A K  KK  EE+ + GKN+WFF KL F
Sbjct:   40 HAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.788e-21
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    7 HCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            H ++AGI +YP KV +    KK  K++++K F+K+V+Y HL+PTRY++DV   K  ++ ++L++  KK  A  E K + EER+KTGKN+WFFTKLRF
Sbjct:   40 HAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          
BLAST of CK935406 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-18
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    4 GHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLD-------VDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 294
            GHCLVAGI KYP  ++R  S K   K++ +++FVK+VNY H+MPTRY  +         LK+ V+ +S Q   K+       KK  E + K GK++WFF+KLRF
Sbjct:   42 GHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          
The following BLAST results are available for this feature:
BLAST of CK935406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_CANFA9.480e-2353.6160S ribosomal protein L27 OS=Canis familiaris GN=R... [more]
RL27B_SCHPO2.758e-2248.9860S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_CANAL3.603e-2251.5560S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27_CAEEL1.788e-2148.4560S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27_DICDI2.416e-1844.2360S ribosomal protein L27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935406 ID=CK935406; Name=CK935406; organism=Citrus sinensis; type=EST; length=480bp
GGGGGGCACTGTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGGTCAT
CCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAAGGCCT
TCGTCAAGTTGGTCAACTACCAGCACCTGATGCCCACGCGCTACACTCTC
GACGTCGATTTGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGCAAGGA
CAAGAAGGTGACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGT
TTAAGACTGGCAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTTAGATT
TTTAACCAAAGGAAGAAAGCAACTTGTCGTTTTGTTTTGTTTTGTGTTAT
TGAAAACGCTTTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTAGTGTT
TTGTGAACTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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