CK935407

Overview
NameCK935407
Unique NameCK935407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CML30_ORYSJ (Probable calcium-binding protein CML30 OS=Oryza sativa subsp. japonica GN=CML30 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGI-----KCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 189
            +LREAFD++D +K+GLISAEEL  VL  LG+     + +V  C  MI+ VD+DGDG V+FEEF+ MMT
Sbjct:  165 DLREAFDVFDGNKDGLISAEELGTVLESLGLRQHGGRPAVAECRDMIRLVDSDGDGMVSFEEFKRMMT 232          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKC--SVDGCVAMIKPVDADGDGNVNFEEFRSMM 186
            +++EAF+++DQ+ +G I+ +EL  VL+ LG+K   ++D C  MIK VD DGDG VN++EFR MM
Sbjct:   79 DMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMM 142          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            ELREAF ++D+D NG ISA EL  V+  LG K S +    MI+  D DGDG VN+EEF  MMT+
Sbjct:   88 ELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTS 151          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMTT
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTT 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKC--SVDGCVAMIKPVDADGDGNVNFEEFRSMM 186
            ++++AF+++DQD +G I+ EEL  V+  LG+K   ++DGC  MI  VDADGDG VN++EF  MM
Sbjct:  143 DMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEFLQMM 206          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 186
            ++REAF+++DQ+++G I+ EEL  VL  LG+K   +++ C  MI  VD DGDG VNF+EF+ MM
Sbjct:   78 DMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CML33_ARATH (Probable calcium-binding protein CML33 OS=Arabidopsis thaliana GN=CML33 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNF 165
            EL++AF LYD + +G ISA EL++V+ RLG KC+V+ CV M++ +D DGDG + F
Sbjct:   80 ELKDAFKLYDINCDGKISANELHVVMTRLGEKCTVESCVGMVQAIDVDGDGYIRF 134          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   16 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTS 79          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   92 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 155          
The following BLAST results are available for this feature:
BLAST of CK935407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CML30_ORYSJ2.548e-1255.88Probable calcium-binding protein CML30 OS=Oryza sa... [more]
CML7_ARATH1.265e-1150.00Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CALM_CHLRE1.265e-1154.69Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]
CALM_CAEEL2.157e-1153.13Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CML5_ARATH2.818e-1150.00Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
CML3_ARATH4.806e-1150.00Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML33_ARATH4.806e-1152.73Probable calcium-binding protein CML33 OS=Arabidop... [more]
CALM_SUBDO6.277e-1151.56Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_STRPU6.277e-1151.56Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CALM_STRIE6.277e-1151.56Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935407 ID=CK935407; Name=CK935407; organism=Citrus sinensis; type=EST; length=474bp
GAGCTCCGCGAGGCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGAT
TTCGGCGGAGGAGTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCT
CGGTTGATGGATGTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGAT
GGCAATGTGAATTTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAA
ACCTGGTCCTGCGCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGG
CCGTACCGATATCAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGT
GCCTACTTGTGTCTACTACTTTTAATGTTAATAAACTCTGATGCATTTTC
AATGGTTTAAAAATTGGCTTACGATATTAATTTGACTGTACGGTCTCAAT
GAATCGATGAGTTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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