CK935407

Overview
NameCK935407
Unique NameCK935407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_METSE (Calmodulin OS=Metridium senile PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 186
            E++EAF ++D+D NG ISA EL  V+  LG K S D    MI+  D DGDG +N+EEF  MM
Sbjct:   85 EIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 189
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMT 147          
The following BLAST results are available for this feature:
BLAST of CK935407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CALM1_BRAFL6.277e-1151.56Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CALM_STIJA8.198e-1151.56Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_METSE8.198e-1151.56Calmodulin OS=Metridium senile PE=1 SV=3[more]
CALM_BLAEM8.198e-1151.61Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CALMB_HALRO8.198e-1152.38Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935407 ID=CK935407; Name=CK935407; organism=Citrus sinensis; type=EST; length=474bp
GAGCTCCGCGAGGCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGAT
TTCGGCGGAGGAGTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCT
CGGTTGATGGATGTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGAT
GGCAATGTGAATTTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAA
ACCTGGTCCTGCGCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGG
CCGTACCGATATCAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGT
GCCTACTTGTGTCTACTACTTTTAATGTTAATAAACTCTGATGCATTTTC
AATGGTTTAAAAATTGGCTTACGATATTAATTTGACTGTACGGTCTCAAT
GAATCGATGAGTTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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