CK935408

Overview
NameCK935408
Unique NameCK935408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A4_PIG (Electrogenic sodium bicarbonate cotransporter 1 OS=Sus scrofa GN=SLC4A4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.691e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQ 428
            V+EQR++  L  ++ G  V   P+LK IP  VL+G F +M + +L G QF +R+ LL         +  +    ++  VP + +  FT  Q    +LC  + WI    +A ++FP++I+ LV VR+
Sbjct:  873 VREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFMDRLKLLL------MPLKHQPDFIYLRHVPLRRVHLFTFLQ----VLCLALLWILKSTVAAIIFPVMILALVAVRK 988          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A4_MOUSE (Electrogenic sodium bicarbonate cotransporter 1 OS=Mus musculus GN=Slc4a4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.691e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQ 428
            V+EQR++  L  ++ G  V   P+LK IP  VL+G F +M + +L G QF +R+ LL         +  +    ++  VP + +  FT  Q    +LC  + WI    +A ++FP++I+ LV VR+
Sbjct:  873 VREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFMDRLKLLL------MPLKHQPDFIYLRHVPLRRVHLFTFLQ----VLCLALLWILKSTVAAIIFPVMILALVAVRK 988          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A4_HUMAN (Electrogenic sodium bicarbonate cotransporter 1 OS=Homo sapiens GN=SLC4A4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.691e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQ 428
            V+EQR++  L  ++ G  V   P+LK IP  VL+G F +M + +L G QF +R+ LL         +  +    ++  VP + +  FT  Q    +LC  + WI    +A ++FP++I+ LV VR+
Sbjct:  873 VREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFMDRLKLLL------MPLKHQPDFIYLRHVPLRRVHLFTFLQ----VLCLALLWILKSTVAAIIFPVMILALVAVRK 988          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A4_BOVIN (Electrogenic sodium bicarbonate cotransporter 1 OS=Bos taurus GN=SLC4A4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.691e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQ 428
            V+EQR++  L  ++ G  V   P+LK IP  VL+G F +M + +L G QF +R+ LL         +  +    ++  VP + +  FT  Q    +LC  + WI    +A ++FP++I+ LV VR+
Sbjct:  873 VREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFMDRLKLLL------MPLKHQPDFIYLRHVPLRRVHLFTFLQ----VLCLALLWILKSTVAAIIFPVMILALVAVRK 988          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: B3A4_HUMAN (Anion exchange protein 4 OS=Homo sapiens GN=SLC4A9 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.515e-11
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQYLLPKFFKAVHLQDLDAAEYEEAPAI 506
            ++EQRL+ L+  ++ G  +   P+LK IP  VL+G F +M +  L   QF  R+ LL      +  +L   H      VP   +  FT  Q    L C G+ WI     A ++FPL+++ LV VR+  L + F    L  LD    EE  +I
Sbjct:  808 IREQRLTGLVVFILTGASIFLAPVLKFIPMPVLYGIFLYMGVAALSSIQFTNRVKLLLMPAKHQPDLLLLRH------VPLTRVHLFTAIQ----LACLGLLWIIKSTPAAIIFPLMLLGLVGVRK-ALERVFSPQELLWLDELMPEEERSI 948          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A4_RAT (Electrogenic sodium bicarbonate cotransporter 1 OS=Rattus norvegicus GN=Slc4a4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQ 428
            V+EQR++  L  ++ G  V   P+LK IP  VL+G F +M + +L G QF +R+ LL         +  +    ++  VP + +  FT  Q    +LC  + WI    +A ++FP++I+ LV VR+
Sbjct:  873 VREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFMDRLKLLL------MPLKHQPDFIYLRHVPLRRVHLFTSLQ----VLCLALLWILKSTVAAIIFPVMILALVAVRK 988          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: B3A4_RAT (Anion exchange protein 4 OS=Rattus norvegicus GN=Slc4a9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 57/185 (30.81%), Postives = 82/185 (44.32%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQYLLPKFFKAVHLQDLDAAEYEEAPAISYNMTFEERAIDIDGGEILDEMITRSRGEIRHS 605
            ++EQRL+ L+  ++ G  +   P+LK IP  VL+G F +M +  L   QF +R+ LL      +  VL   H      VP   +  FT  Q    L C G+ W+     A ++FPL+++ LV VR+  L   F    L  LD    EE   I  N    E     +  E  + M      EI  S
Sbjct:  778 IREQRLTGLVVFILTGVSIFLAPVLKFIPMPVLYGIFLYMGVAALSSMQFMKRVQLLLMPRKHQPDVLLLRH------VPLIRVHLFTAIQ----LACLGLLWVIKSTPAAIVFPLMLLGLVAVRK-ALEWIFSPQELLWLDELMPEEEKTIPENRPEPEHLFSGNDSENSELMYQPKAPEINIS 951          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A10_HUMAN (Sodium-driven chloride bicarbonate exchanger OS=Homo sapiens GN=SLC4A10 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 45/142 (31.69%), Postives = 77/142 (54.23%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWI---PIAGVLFPLLIMLLVPVRQYLLPKFFKAVHLQDLD 476
            ++EQR++ L+  +++G  V    +LK IP  VL+G F +M   +L G QF++RI  LF  P++      +    ++  VP + +  FT+ Q    + C G+ WI     A ++FP++++ LV VR+ L+   F    L  LD
Sbjct:  906 IREQRVTGLMIFILMGSSVFMTSILKFIPMPVLYGVFLYMGASSLKGIQFFDRI-KLFWMPAK-----HQPDFIYLRHVPLRKVHLFTIIQ----MSCLGLLWIIKVSRAAIVFPMMVLALVFVRK-LMDLLFTKRELSWLD 1036          
BLAST of CK935408 vs. ExPASy Swiss-Prot
Match: S4A8_HUMAN (Electroneutral sodium bicarbonate exchanger 1 OS=Homo sapiens GN=SLC4A8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 41/125 (32.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   60 VKEQRLSNLLQALMVGGCVAAMPLLKKIPTSVLWGYFAFMAIENLPGNQFWERILLLFTAPSRRYKVLEENHATFIETVPFKSIAAFTLFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYL 434
            ++EQR++ L+  +++G  V    +LK IP  VL+G F +M + +L G QF++R L LF  P++      +    ++  VP + +  FTL Q   L+L + I   P A ++FP++++ LV VR+ +
Sbjct:  875 IREQRVTGLMIFVLMGCSVFMTAILKFIPMPVLYGVFLYMGVSSLQGIQFFDR-LKLFGMPAK-----HQPDFIYLRHVPLRKVHLFTLIQLTCLVLLWVIKASP-AAIVFPMMVLALVFVRKVM 992          
The following BLAST results are available for this feature:
BLAST of CK935408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
S4A4_PIG2.691e-1132.54Electrogenic sodium bicarbonate cotransporter 1 OS... [more]
S4A4_MOUSE2.691e-1132.54Electrogenic sodium bicarbonate cotransporter 1 OS... [more]
S4A4_HUMAN2.691e-1132.54Electrogenic sodium bicarbonate cotransporter 1 OS... [more]
S4A4_BOVIN2.691e-1132.54Electrogenic sodium bicarbonate cotransporter 1 OS... [more]
B3A4_HUMAN3.515e-1132.89Anion exchange protein 4 OS=Homo sapiens GN=SLC4A9... [more]
S4A4_RAT4.591e-1132.54Electrogenic sodium bicarbonate cotransporter 1 OS... [more]
B3A4_RAT4.591e-1130.81Anion exchange protein 4 OS=Rattus norvegicus GN=S... [more]
S4A10_HUMAN5.996e-1131.69Sodium-driven chloride bicarbonate exchanger OS=Ho... [more]
S4A8_HUMAN7.831e-1132.80Electroneutral sodium bicarbonate exchanger 1 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935408 ID=CK935408; Name=CK935408; organism=Citrus sinensis; type=EST; length=932bp
GGGTTGATGAGACTGTTTTTGATGTGGATAAGGATATTGATGATCTTTTA
CCTGTTGAAGTCAAGGAACAACGTCTCAGCAATCTGCTGCAGGCATTGAT
GGTTGGCGGTTGTGTTGCTGCTATGCCTCTCCTGAAGAAGATCCCTACTT
CTGTTCTTTGGGGCTACTTTGCCTTCATGGCCATTGAGAACTTGCCTGGA
AATCAATTTTGGGAGAGGATATTATTGCTTTTCACTGCTCCAAGCCGCAG
ATACAAGGTTTTGGAGGAGAATCATGCAACATTCATTGAGACTGTTCCCT
TCAAATCAATTGCTGCCTTTACTTTGTTCCAGACAGTCTACCTGCTTCTT
TGCTTTGGCATAACATGGATTCCCATAGCTGGCGTCCTTTTCCCACTGTT
GATCATGCTTCTTGTCCCTGTGCGGCAATATTTGCTCCCAAAGTTTTTCA
AAGCTGTTCATCTTCAAGATTTGGATGCTGCAGAATATGAGGAAGCTCCT
GCCATTTCTTACAATATGACATTTGAAGAAAGAGCCATCGACATTGATGG
AGGGGAAATTTTAGATGAAATGATCACACGAAGCCGTGGTGAGATTCGCC
ACTCACAGAGTCCTAAAATTACTAGTTCAACTCCAACTTCACTTGAGGAT
AAAAGATCTCCTCACAGTCCATCGATGCAAAGGGCATATAGTCCCCGTGT
TAGAGAACTGAGGGTGGAAAGAAGCCCCAGCTTGAGCGGAAAAGGGCTAG
AAGTAAAGAAAGTTCCCAGTCCCGGGCCATCTAACCTTGGACAAAGCAGT
AACGGTTCATCTCCATGCTAAAGTCTTGAATGCATAATCCACATGAGTTT
ATTTGTCAATGGTGCTCGAGAGGTCTTGTACTAAGTTCATNNNACTACGT
GTTAGATGTGCTTCTCTTCCTATTTCTAACCA
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