CK935409
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12 Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496 +RS +AG QFPVGRI R LK S RVG A GNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12 Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496 +RS +AG QFPVGRI R LK S RVG A GNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12 Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 +RS +AG QFPVGR+ R LK + RVG A GNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K + Sbjct: 28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSA 132
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12 Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496 S+S K G FPVGR+G +++G+Y++R+G +GA AA+ KK R+ PR V+LA R+D+++G LL VT++H GV+P+++ + KK Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKK 121
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 2 Query: 188 RSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496 RS KA QF V R+ LKKGRY +R+G AP N +K+ I PRH++LAVRND E+ KL GVTI+ GV+P L +K Sbjct: 18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 ++S +AG QFPVGRI R+LK + R+G A GNA++D + RI PRH+ LA+R DEEL ++ TIA GGVLP+I+ L+ S Sbjct: 25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLIKAPS 129
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 466 SRS +AG FPV R+ R L++GR++ RV + AP N +KK RI P+H+ AV ND EL L VTIA+GGVLP Sbjct: 36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129 The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 237
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bpback to top |