CK935409

Overview
NameCK935409
Unique NameCK935409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            +RS +AG QFPVGRI R LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            +RS +AG QFPVGRI R LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGR+ R LK +     RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K +
Sbjct:   28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSA 132          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            S+S K G  FPVGR+G  +++G+Y++R+G +GA                     AA+  KK  R+ PR V+LA R+D+++G LL  VT++H GV+P+++  +  KK
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKK 121          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  188 RSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            RS KA  QF V R+   LKKGRY +R+G  AP                   N    +K+  I PRH++LAVRND E+ KL  GVTI+  GV+P     L  +K
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            ++S +AG QFPVGRI R+LK    +  R+G  A                   GNA++D +  RI PRH+ LA+R DEEL  ++   TIA GGVLP+I+  L+   S
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLIKAPS 129          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 466
            SRS +AG  FPV R+ R L++GR++ RV + AP                   N    +KK RI P+H+  AV ND EL  L   VTIA+GGVLP
Sbjct:   36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129          
The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
H2AZL_XENTR1.301e-1245.71Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA1.301e-1245.71Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV3_ARATH1.301e-1243.40Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2A2_LEIIN2.898e-1236.79Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LILLO4.943e-1240.78Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2AZ_USTMA6.456e-1240.57Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AX_DICDI6.456e-1242.55Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTGTTTCTCG
AGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCTTCTTGAC
TTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAGCAGGAGG
AAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCGGTGAAAG
CCGGTCCGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAAGAAGGGA
CGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTGT
ACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCGA
GGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTTGGCTGTA
AGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTCA
CGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCTG
AGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTCC
CCAAAGAAGGCCTGGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGTT
ACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATTT
AGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTTT
TGCTTCGACTGTAGAATGAATGAAATCGTGGTACTTGTTCCG
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