CK935409

Overview
NameCK935409
Unique NameCK935409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:45..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 70/105 (66.67%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            S S KAG QFPVGRIGRYLKKG+Y++RVG GAP                  GNAARDNKK+RI PRH+ LAVRNDEEL K LAGVT A GGVLPNI+ VLLPKKS
Sbjct:   17 SNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.755e-31
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+ VLLPKKS
Sbjct:   20 SRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R+L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.257e-30
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.257e-30
Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            SRS KAG QFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI  VLLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.257e-30
Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            SRS KAG QFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI  VLLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            SRS KAG QFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI+  LLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            SRS KAG QFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI+  LLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 68/105 (64.76%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R+LKKG Y  RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.171e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y++R+G GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKS
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKS 120          
The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
H2A_PLAFA2.787e-3166.67Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2AX_PICAB4.755e-3165.71Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AL_STRPU1.807e-3064.76Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2A_ACRFO5.257e-3065.71Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2AXA_ORYSJ5.257e-3065.38Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI5.257e-3065.38Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2AXB_ORYSJ6.866e-3064.42Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI6.866e-3064.42Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2A2_PSAMI6.866e-3064.76Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A_URECA1.171e-2963.81Histone H2A OS=Urechis caupo PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTGTTTCTCG
AGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCTTCTTGAC
TTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAGCAGGAGG
AAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCGGTGAAAG
CCGGTCCGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAAGAAGGGA
CGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTGT
ACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCGA
GGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTTGGCTGTA
AGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTCA
CGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCTG
AGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTCC
CCAAAGAAGGCCTGGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGTT
ACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATTT
AGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTTT
TGCTTCGACTGTAGAATGAATGAAATCGTGGTACTTGTTCCG
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