CK935409

Overview
NameCK935409
Unique NameCK935409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGRI R L+KG Y+QRVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R+L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKKS
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNK NRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   21 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496
            SRS +AG QFPVGR+ R+L+KG Y+ RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 67/105 (63.81%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGR+ R+LKKG Y  RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
H2A_SEPOF1.529e-2963.81Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2A_PARLI1.529e-2963.81Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_MYTGA1.529e-2963.81Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED1.529e-2963.81Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH1.529e-2963.81Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA1.529e-2963.81Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_MOUSE1.529e-2963.81Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2AX_CICAR1.529e-2963.46Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2A4_PSAMI1.529e-2964.42Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A1_PSAMI1.529e-2963.81Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTGTTTCTCG
AGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCTTCTTGAC
TTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAGCAGGAGG
AAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCGGTGAAAG
CCGGTCCGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAAGAAGGGA
CGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTGT
ACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCGA
GGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTTGGCTGTA
AGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTCA
CGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCTG
AGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTCC
CCAAAGAAGGCCTGGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGTT
ACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATTT
AGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTTT
TGCTTCGACTGTAGAATGAATGAAATCGTGGTACTTGTTCCG
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