CK935409

Overview
NameCK935409
Unique NameCK935409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGR+ R+L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R+L+KG Y+QRVG GAP                  GNAA DNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:    3 SRSSRAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 66/105 (62.86%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGRI R L+KG Y+ RVG GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y+ RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R+L+KG Y++RVG GAP                  GNAARDNKK RI PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            +RS +AG QFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
H2AE_PSAMI3.407e-2962.86Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A6_ARATH3.407e-2961.90Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A3_LYTPI3.407e-2962.86Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A3_ARATH3.407e-2961.90Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A_PLADU4.450e-2962.86Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_MYTTR4.450e-2963.81Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A2_ARATH4.450e-2961.90Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A_ONCMY5.812e-2962.86Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_ASTRU5.812e-2961.90Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2AX_DANRE5.812e-2962.86Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTGTTTCTCG
AGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCTTCTTGAC
TTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAGCAGGAGG
AAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCGGTGAAAG
CCGGTCCGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAAGAAGGGA
CGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTGT
ACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCGA
GGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTTGGCTGTA
AGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTCA
CGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCTG
AGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTCC
CCAAAGAAGGCCTGGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGTT
ACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATTT
AGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTTT
TGCTTCGACTGTAGAATGAATGAAATCGTGGTACTTGTTCCG
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