CK935409
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29 Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP K Sbjct: 24 SRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29 Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL +LL VTIA+GGV+PNI+ +LLPKK+ Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29 Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL +LL VTIA+GGV+PNI+ +LLPKK+ Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 5.812e-29 Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 +RS +AG QFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKT 121
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.591e-29 Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 496 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP K Sbjct: 24 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3) HSP 1 Score: 127.487 bits (319), Expect = 7.591e-29 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS +AG QFPVGRI R L+KG Y++R+G GAP GNA+RDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 17 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+ LLPKK+ Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+ LLPKK+ Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+ LLPKK+ Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29 Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499 SRS KAG QFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+ LLPKK+ Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122 The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 237
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bpback to top |