CK935409

Overview
NameCK935409
Unique NameCK935409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS +AG QFPVGR+ R L+KG YS+RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 67/105 (63.81%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG  FPVGRI R L+KG Y+QRVG+GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   16 SRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 120
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG QFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG  FPVGR+ R L+KG Y+QRVG+GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
[Close]
BLAST of CK935409 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  185 SRSVKAGPQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 499
            SRS KAG  FPVGR+ R L+KG Y+QRVG+GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS 121
The following BLAST results are available for this feature:
BLAST of CK935409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
H2A1_ORYSI9.914e-2961.90Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A3_RAT1.295e-2862.86Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE1.295e-2862.86Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN1.295e-2862.86Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A2_PICGU1.295e-2863.81Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A2_ORYSJ1.691e-2860.95Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI1.691e-2860.95Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT2.209e-2860.95Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A1_PICST2.209e-2862.86Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A1_DEBHA2.209e-2862.86Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935409 ID=CK935409; Name=CK935409; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTGTTTCTCG
AGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCTTCTTGAC
TTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAGCAGGAGG
AAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCGGTGAAAG
CCGGTCCGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAAGAAGGGA
CGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTGT
ACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCGA
GGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTTGGCTGTA
AGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTCA
CGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCTG
AGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTCC
CCAAAGAAGGCCTGGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGTT
ACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATTT
AGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTTT
TGCTTCGACTGTAGAATGAATGAAATCGTGGTACTTGTTCCG
back to top