CK935412

Overview
NameCK935412
Unique NameCK935412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:295..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.661e-24
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA AFPGFG +G+    KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++   +S            PG +YYGRGPIQL+ N NY   G A+
Sbjct:   55 DAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAI 155          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.476e-24
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA AFPGFG +G+    KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+
Sbjct:  110 DAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAI 210          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.929e-24
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            +AF+ AA AFP FG +GN    KRE+AAF  QT HETTGGW  AP G ++WGYC+ ++ +P S            PG +YYGRGPIQL++N NY   G A+
Sbjct:  119 EAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAI 219          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.744e-24
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA AFPGFG +G+    KR++AAF AQT HETTGGW  AP G +AWGYC+ ++   A+            PG +YYGRGPIQL+ N NY   G A+
Sbjct:   55 DAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAI 155          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.321e-23
Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI+AA  FP FG +GN+   +RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+                YYGRGPIQLT   NY   G+AL
Sbjct:   56 DAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP-------------PYYGRGPIQLTHKYNYQLAGDAL 142          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.943e-23
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA++F GFG +G++   K+E+AAF AQT HETTGGW  AP G YAWGYC++ + +                 +YYGRGPIQLT N NY   G+A+
Sbjct:  110 DAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAI 209          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 2.943e-23
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA AF GFG +G     KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+
Sbjct:  107 DAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAI 207          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.253e-22
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            DA + AA AFP F  +G++   KRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++   +S           P  +Y+GRGPIQL++N NY   GEA+
Sbjct:  116 DALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAI 216          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.236e-21
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNET-MGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD---XXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA AFPGF  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+  +   A+                 +YYGRGPIQL++N NY   G+A+
Sbjct:  111 DAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAI 214          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVS-PASSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA AFP F  +G+    KRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +    SD              +YYGRGPIQ+++N NY   G+A+
Sbjct:  109 DAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAI 211          
The following BLAST results are available for this feature:
BLAST of CK935412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CHI2_HORVU2.661e-2452.4826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIA_SECCE3.476e-2452.48Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_ORYSJ5.929e-2450.50Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE7.744e-2451.49Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI11_ORYSJ1.321e-2351.00Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIX_PEA2.943e-2350.00Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_HORVU2.943e-2351.4926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI9_ORYSJ3.253e-2247.52Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ1.236e-2149.04Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_ORYSJ2.109e-2147.57Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_B01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935412 ID=CK935412; Name=CK935412; organism=Citrus sinensis; type=EST; length=301bp
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGGGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCT
TGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTG
TTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
G
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