CK935412

Overview
NameCK935412
Unique NameCK935412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 49/101 (48.51%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    4 AFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            +F+ AA  FP F  +G     KRE+AAF AQ  HETTGGW  AP G YAWG CY  +++P SS  D             Y+GRGPIQ++WN NY   G+AL
Sbjct:   80 SFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQAL 180          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.754e-21
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            +AFI A + F  FG +G+     +EIAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG +Y+GRGPIQ+++N NY   G A+
Sbjct:   35 EAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAI 135          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.136e-21
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +  +                +YYGRGPIQ+T+N NY   G+A+
Sbjct:  106 DAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAI 207          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.332e-20
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA +FPGFG +G++T  K+EIAAFF QT HETTGG T +P G YA GYC++R+ +   +              YYGRGPIQLT   NY   G+A+
Sbjct:   56 DAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-------------YYGRGPIQLTGQSNYDLAGKAI 141          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA +FPGFG +G++T  K+EIAAFF QT HET GG      G +  GYC++RQ+  +               +YYGRGPIQLT   NY R G+ +
Sbjct:   57 DAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD--------------RYYGRGPIQLTHQSNYERAGQGI 138          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 49/100 (49.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA +FPGFG +G++T  K+EIAAFF QT HETTGG   A  G +A GYC++R+ +   S              +YGRGPIQLT   NY   G+A+
Sbjct:   49 DAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-------------FYGRGPIQLTGQSNYDLAGQAI 134          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA +FPGFG +G++T  K+EIAAFF QT HET GG      G +  GYC+++Q+  +               +YYGRGPIQLT   NY R G+ +
Sbjct:   57 DAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD--------------RYYGRGPIQLTHQSNYERAGQGI 138          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.182e-18
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEAL 300
            DA+  A + +PGFG +G++   KRE+AAFFAQT  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  L
Sbjct:   93 DAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYL 193          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.722e-18
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA +FPGFG SG++T  ++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+
Sbjct:   57 DAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNQNNYEKAGNAI 140          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.349e-18
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNET-MGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA +FP FG SG    + +RE+AAFF QT HETTGG T     ++ WGYC+  +++ A+S              YYGRGPIQLT   NY   G AL
Sbjct:   62 DAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP------------PYYGRGPIQLTGQSNYQAAGNAL 149          
The following BLAST results are available for this feature:
BLAST of CK935412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CHI10_ORYSJ2.109e-2148.51Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC2.754e-2146.53Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI3_ORYSJ6.136e-2146.08Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY2.332e-2051.00Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIA_SOLCI3.367e-1947.00Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_SOLLC5.743e-1949.00Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLLC5.743e-1946.00Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_POPTR2.182e-1843.14Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIP_TOBAC3.722e-1848.00Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ6.349e-1847.52Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_B01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935412 ID=CK935412; Name=CK935412; organism=Citrus sinensis; type=EST; length=301bp
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGGGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCT
TGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTG
TTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
G
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