CK935413

Overview
NameCK935413
Unique NameCK935413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3182 contig Csv1_Contig3182:340..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.162e-31
Identity = 71/222 (31.98%), Postives = 122/222 (54.95%), Query Frame = 3
Query:  258 KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAI 914
            +++ AC+ WGFF+LVNHG+S   ++KV+K  K  +   ME++ K       V   G   V +E    DW   F +  LPV          L    +  ++ ++ EL+ LA  ++  + + L ++   L++ F          +++ YPPCP+PE + GL  H+D   L +L Q ++V GL +  +GKW+ + P+ ++ ++N+GD LE++TNG Y+S+ HR I
Sbjct:   24 QINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEM-----VASKGLDSVETEINDTDWESTFFLRHLPVSNMSE--IGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVI 238          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.742e-31
Identity = 80/244 (32.79%), Postives = 124/244 (50.82%), Query Frame = 3
Query:  195 QIPVIDMQXXXXXXXXXXXXAK--LDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            ++PVID+              K  +  A +EWGFFQ++NHG+S   LEK+++E    F    ++K K  +       +G     S  Q L W++ F +    +   K         +L  T+E ++ E ++LA  L   + +         +E        +RMN YPPCP+P +V GL PH+D   LTIL Q ++V GLQ+  + +WI + P P A I+NIGD  +  +NG Y+S+EHR + N
Sbjct:   41 ELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSEKFSAGSYRWGTPSATSIRQ-LSWSEAFHVPMTDISDNKDFT------TLSSTMEKFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQ-DQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTN 276          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.742e-31
Identity = 75/248 (30.24%), Postives = 134/248 (54.03%), Query Frame = 3
Query:  192 SQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS----MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            S  PVI+M+             +LD AC+ WGFF+++NHG+S+  +++V+K  K  +    E++   +      EG      V++ +KLDW   F +  LP         P L    R  ++ ++ EL++LA  L+  + + L ++   L + F     +     +++ YPPCP+P+ V GL  H+D   + +L Q + V GLQ+  +G+W+ + P+ ++ +VN+GD LE++TNG Y+S+ HR +  +
Sbjct:    5 STFPVINMELLAGEERPAAME-QLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDD---VNKAEKLDWESTFFVRHLPESNIAD--IPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQT 246          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.150e-30
Identity = 75/248 (30.24%), Postives = 134/248 (54.03%), Query Frame = 3
Query:  192 SQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS----MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            S  PVI+M+             +LD AC+ WGFF+++NHG+S+  +++V+K  K  +    E++   +      EG      V++ +KLDW   F +  LP         P L    R  ++ ++ EL++LA  L+  + + L ++   L + F     +     +++ YPPCP+P+ V GL  H+D   + +L Q + V GLQ+  +G+W+ + P+ ++ +VN+GD LE++TNG Y+S+ HR +  +
Sbjct:    5 STFPVINMELLAGEERPAAME-QLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDD---VNKAEKLDWESTFFVRHLPESNIAD--IPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQT 246          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.150e-30
Identity = 72/230 (31.30%), Postives = 125/230 (54.35%), Query Frame = 3
Query:  255 AKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSM-----RMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            A L  AC+ WG ++L+NHG+S   + +V+   K  +    E++ K +       VE         E + LDW   F +  LP         P L    R T++ +++EL++LA  L+  + + L ++   L++ F  G   +     +++ YPPCP+PE + GL  H+D   + +L Q ++V GLQ+  +G+WI + P+ ++ +VNIGD LE++TNG Y+S+ HR +  +
Sbjct:   24 ALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLDTVENV-------EPENLDWESTFFLRHLPTS--NISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQT 244          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.150e-30
Identity = 85/260 (32.69%), Postives = 124/260 (47.69%), Query Frame = 3
Query:  165 PLNSDDTLISQIPVIDMQXXXXXXXXXXXXA--KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKL------DWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            PL SD   +  IP ID+             A   +  A  +WGFFQ++NHGVS   LEK+K  V+ F     E +K  +        FG+ F+      L      +W D F     P     P     LP   RD +  YS ++  L   L   + + L +    L++        M  +Y+PPCP+P+   G + HSDGS LT+LL  N +EGLQ+   G W  +  +P A I+NIGD L+++TN  + S++HR + N
Sbjct:   53 PLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRD-----FGRKFIYLSNFDLYTAAAANWRDTFYCYMAP----DPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDN-IEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLAN 302          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.962e-30
Identity = 71/221 (32.13%), Postives = 118/221 (53.39%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+ WGFF+LVNHG+    ++ V+K  KG +   ME++ K       V   G   V +E   LDW   F +  LP         P L    R+ +  ++  L+ LA  L+  + + L ++   L+  F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  + +WI + P+ ++ +VN+GD LE++TNG Y+S+ HR I  +
Sbjct:   27 ACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKEL-----VASKGLEAVQAEVTDLDWESTFFLRHLPTS--NISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQT 240          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.962e-30
Identity = 71/221 (32.13%), Postives = 118/221 (53.39%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+ WGFF+LVNHG+    ++ V+K  KG +   ME++ K       V   G   V +E   LDW   F +  LP         P L    R+ +  ++  L+ LA  L+  + + L ++   L+  F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  + +WI + P+ ++ +VN+GD LE++TNG Y+S+ HR I  +
Sbjct:   27 ACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKEL-----VASKGLEAVQAEVTDLDWESTFFLRHLPTS--NISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQT 240          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.707e-30
Identity = 69/225 (30.67%), Postives = 122/225 (54.22%), Query Frame = 3
Query:  258 KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            +++ AC+ WGFF+LVNHG+   FL+ V+K  +  +   MEE+ K       V   G     +E   +DW   F +  LP           L    +  ++ ++ +L++LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  +G WI + P+ +A +VN+GD LE++TNG Y+S+ HR +  +
Sbjct:   23 QIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKE-----TVLSKGLEAAQAEVNDMDWESTFFLRHLPES--NISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQT 240          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.271e-29
Identity = 84/274 (30.66%), Postives = 138/274 (50.36%), Query Frame = 3
Query:  150 PDEDSPLNSDDTLIS----------QIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVH-LRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEE-----LREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQI-KNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            PD       DD L S           IP+ID+              ++  AC+ WG FQ+ NHGV    L+ ++      F L ++ K K  +    V G+G A + S   K  W++ F++   P++  RK  L+P+   +  D +E Y   +K LA  L+      L + +E+     L    +    ++++N+YP CP+P++ MGL  H+D + LTIL Q N   GLQ+ +++  W+ + P P + +VN+GD   I++NG ++S+ HRA VN
Sbjct:   31 PDSYKWTPKDDLLFSAAPSPPATGENIPLIDLDHPDATN-------QIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRK--LWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQ-NNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVN 294          
The following BLAST results are available for this feature:
BLAST of CK935413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ACCO3_CUCME5.162e-3131.981-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
G2OX8_ARATH6.742e-3132.79Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
ACCO1_ORYSI6.742e-3130.241-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ1.150e-3030.241-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_DORSP1.150e-3031.301-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCH2_ARATH1.150e-3032.691-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO4_SOLLC1.962e-3032.131-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO1_SOLLC1.962e-3032.131-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO1_CUCME5.707e-3030.671-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
G3OX1_ARATH1.271e-2930.66Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935413 ID=CK935413; Name=CK935413; organism=Citrus sinensis; type=EST; length=926bp
GGGGGTTCCAAAACCAATACAAAACTGTAGCAATCTTAAGAGGATTTGTG
GAACAAAAGATGGCCAAGATTGGAGGTTCTCTGCTTGTTCCTTGTGTTCA
AGAGTTGGTCAAGAATCCTATGTTAGTTGTCCCTCCTAGATACATTTGTC
CGGACGAAGATTCACCACTCAATTCTGATGATACTTTGATTTCACAGATA
CCAGTTATTGACATGCAGAGCTTGCTTTCTGAAGAATCAATGGATTCTGA
GTTAGCCAAGCTCGACTTCGCTTGCAAAGAATGGGGTTTTTTCCAGCTGG
TAAACCATGGAGTAAGCTCAGCATTTCTAGAGAAAGTGAAGAAAGAGGTT
AAGGGCTTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCA
TCCAGGAGATGTAGAAGGATTTGGACAAGCCTTTGTTGTATCTGAGGAAC
AAAAGCTTGATTGGGCTGACATTTTCTCCATGATCACTCTTCCAGTTCAT
CTGAGGAAGCCACACTTATTTCCTAAGCTCCCTCCTTCCCTCAGAGACAC
CTTGGAAGTTTACTCGATGGAGTTAAAATCTCTGGCCATGAACCTGATAT
CGAAAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTC
TTTGACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCC
TCAGCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTC
TTACCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAAC
AATGGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAA
CATCGGAGACACATTGGAGATTATGACCAATGGGACATACCGTAGCATTG
AACATCGTGCAATTGTGAACTCTATG
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