CK935414

Overview
NameCK935414
Unique NameCK935414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935414_ssr151 microsatellite CK935414_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:9..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKH VSEGTKAVTK
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 135
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 132
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.237e-38
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.237e-38
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKH VSEGTKAVTK
Sbjct:   60 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 147
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKH VSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
The following BLAST results are available for this feature:
BLAST of CK935414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B11_ORYSI8.537e-3992.05Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B8_ORYSJ2.484e-3892.05Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI2.484e-3892.05Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI2.484e-3892.05Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT2.484e-3892.05Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B6_ORYSJ4.237e-3890.91Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_MAIZE4.237e-3890.91Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B7_ORYSJ5.534e-3890.91Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B7_ORYSI5.534e-3890.91Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ5.534e-3890.91Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935414 ID=CK935414; Name=CK935414; organism=Citrus sinensis; type=EST; length=661bp
GGGGGAAATCGAAATAACAAAGTAAAAAGAAATCAAATGGCAGCGAAAGC
CGAGAAACAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGCTG
CCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCGAC
AAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTACAT
ATTCAAGGTGCCGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAAGG
CCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGGCT
CAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACTTC
TCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGCCA
AGCATGTCGTTTCTGAAGGCACCAAGGCTGTCACTAAGCTTACTAGCTCT
TAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAGCT
TGGGCTCTGCAATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTTTGGTTG
TAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACCTA
ATCGAAGTTCTTTTTGCTCAAGTTCAATTACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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