CK935414

Overview
NameCK935414
Unique NameCK935414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935414_ssr151 microsatellite CK935414_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:9..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            ++ETYKIYIFKV KQVHPDIGISSKAM I NSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKH VSEGTKAVTK
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 131          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1
Query:  178 VETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            VETYK+YI+KV KQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1
Query:  178 VETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            VETYK+YI+KV KQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1
Query:  178 VETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            VETYK+YI+KV KQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   66 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 152          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1
Query:  178 VETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            VETYK+YI+KV KQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1
Query:  181 ETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            ETYK+YI+KV KQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 151          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.765e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1
Query:  181 ETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            ETYK+YI+KV KQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 153          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 1
Query:  184 TYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            T KIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLA E+SRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTK
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTK 115          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1
Query:  181 ETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            E+Y IY++KV KQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKH VSEGTKAVTK
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 119          
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1
Query:  181 ETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            E+Y IY++KV KQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKH VSEGTKAVTK
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 119          
The following BLAST results are available for this feature:
BLAST of CK935414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B4_WHEAT6.118e-3788.64Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE2.325e-3686.21Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE2.325e-3686.21Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE2.325e-3686.21Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE2.325e-3686.21Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA6.765e-3686.05Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA6.765e-3686.05Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA2.176e-3488.24Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B_SALTR4.848e-3482.56Histone H2B OS=Salmo trutta PE=1 SV=2[more]
H2B_ONCMY4.848e-3482.56Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004555_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935414 ID=CK935414; Name=CK935414; organism=Citrus sinensis; type=EST; length=661bp
GGGGGAAATCGAAATAACAAAGTAAAAAGAAATCAAATGGCAGCGAAAGC
CGAGAAACAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGCTG
CCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCGAC
AAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTACAT
ATTCAAGGTGCCGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAAGG
CCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGGCT
CAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACTTC
TCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGCCA
AGCATGTCGTTTCTGAAGGCACCAAGGCTGTCACTAAGCTTACTAGCTCT
TAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAGCT
TGGGCTCTGCAATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTTTGGTTG
TAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACCTA
ATCGAAGTTCTTTTTGCTCAAGTTCAATTACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
back to top