CK935417

Overview
NameCK935417
Unique NameCK935417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.342e-40
Identity = 78/164 (47.56%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL   + V    A +FA+  G+ F E SA N  NV+ +F  +  EI
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 5.342e-40
Identity = 78/164 (47.56%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL   + V    A +FA+  G+ F E SA N  NV+ +F  +  EI
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.977e-40
Identity = 80/174 (45.98%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  ++I   +   EL+
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.977e-40
Identity = 80/174 (45.98%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  ++I   +   EL+
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.112e-40
Identity = 83/186 (44.62%), Postives = 124/186 (66.67%), Query Frame = 2
Query:  146 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 703
            ++ DY+FK+++IGDS+VGKS +L RF  + +     STIGV+F+ RT+  +GK IK QIWDTAGQER+R +TS+YYRGA G ++VYD T+ +SF++V +W+ E+  +A+ S+  +LIGNK+D+V+ + VS E     A++ G+ F E SA +  NV+ AF  +  EI     K   +    K  GP
Sbjct:    3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEI---KKKMGSQTNANKTSGP 185          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 9.112e-40
Identity = 80/174 (45.98%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  ++I   +   EL+
Sbjct:    6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.190e-39
Identity = 80/164 (48.78%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RTV  +GK IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W+ E+  +A  ++  +L+GNK DL + R VS E     A++ G+ F E SA +  NV+ AF  +  EI
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEI 169          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.190e-39
Identity = 75/172 (43.60%), Postives = 114/172 (66.28%), Query Frame = 2
Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 673
            Y+ K ++IG  +VGKS +L RF  N+F   S  TIGV+F +R V I GK +K QIWDTAGQER+R+V  +YYRG+ G  +VYD+T R+S++H+  W+ ++++ A   + IIL+GNK+DL + R V+  +A + A++ GL F E SAL G+ V+  F +  + I   +   E+
Sbjct:    6 YLVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTIMTKIDSGEV 177          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.554e-39
Identity = 81/171 (47.37%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 664
            DY+FK++VIGDS  GKS +L RF  N +     STIGV+F+ +TV I+   IK QIWDTAGQER+R +TS YYRGA G + VYD+T + SFDH+   W++++  +A S++  +LIGNK DLVD R V A++A   AE   + + EASA    NV+ AF  + + +   V++
Sbjct:    5 DYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQ 175          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.554e-39
Identity = 78/164 (47.56%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T + SF++V +W++E+  +A  ++  +L+GNK DL   + V    A +FA+  G+ F E SA N  NV+ +F  +  EI
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
The following BLAST results are available for this feature:
BLAST of CK935417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_HUMAN5.342e-4047.56Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA5.342e-4047.56Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB4A_RAT6.977e-4045.98Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_BOVIN6.977e-4045.98Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RABD1_ARATH9.112e-4044.62Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB4A_HUMAN9.112e-4045.98Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RIC1_ORYSJ1.190e-3948.78Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB4_DICDI1.190e-3943.60Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB1_THEAN1.554e-3947.37Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB1A_PIG1.554e-3947.56Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935417 ID=CK935417; Name=CK935417; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGAGGAATATTTAAAAAGAATACATCCCCCTCCAGAGTGAGAATTT
TTTCTGGTGAAAGTGAAAAAAAGAAAAAAATGAACGAAGAAATGAGTGGC
GATGCCACCGATCATCGCCATCAACAACAAGAGAATATGATTCCTGACAA
AATAGACTATGTGTTCAAGGTAGTGGTGATCGGTGACTCGGCCGTGGGCA
AGTCTCAGATTCTTTCGAGATTCACCAAGAATGAGTTTTTCTTTGACTCG
AAATCAACCATTGGCGTCGAGTTCCAAACCAGAACTGTCACCATCAACGG
CAAGATCATCAAAGCCCAGATCTGGGACACTGCTGGCCAAGAAAGGTACC
GGGCGGTGACAAGTGCGTACTATAGAGGTGCCTTAGGGGCCGTAGTAGTG
TACGACATCACGAAACGACAGTCGTTTGATCATGTGGCTAGGTGGGTGGA
GGAACTGCGCGCTCATGCTGACAGCTCCATCAGGATCATACTGATTGGAA
ACAAATCTGATCTTGTGGATATGCGGGCAGTTTCGGCGGAGGATGCTGTT
AAGTTTGCAGAGGATCAAGGCTTGTTTTTCTCTGAGGCATCCGCACTTAA
TGGTGACAATGTGGATACTGCCTTTTTCAGGCTGCTCCAGGAAATTTACG
GCGCCGTTTCTAAGAAGGAATTGGAATGCGGCAACGGCAAAGTTGATGGG
CCGCCGATGCTTGCGGGTTCCAAGATTGATGTTATCTCTGGGGCTGATTT
GGAAATTAGTGAGATGAAGAAATTATCTACTTGCTCTTGTTGATTTTTCT
TTTTATTATTATTATTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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