CK935417

Overview
NameCK935417
Unique NameCK935417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.096e-44
Identity = 86/172 (50.00%), Postives = 124/172 (72.09%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 670
            DY+ K+VVIGDS VGKS +LSR+ KNEF     STIGVEF T+T+ I+ K+IK Q+WDTAGQE+Y ++T +YY+GA+GA++VY+I  R SF+++ +W+++ R +A     I+L+GNKSDL + R VS  +  +FAE   + F E SAL+ +NV+TAF  L   IY ++ K +
Sbjct:    9 DYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFKNK 180          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.737e-44
Identity = 92/192 (47.92%), Postives = 127/192 (66.15%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELEC--GNGKVDGPPMLAGSK 724
            +Y+FK ++IGD  VGKS +L +FT+N+F  DS  TIGVEF TR V +N K IK QIWDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H+  W+ + R   + +  I+LIGNK DL   R V+ E+A  FA+  GL F E+SA  G+NV+ AF R  + I+ +V +  ++     G    PP     K
Sbjct:    6 EYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPDGGITKNPPQTITDK 197          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.669e-44
Identity = 85/190 (44.74%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSK 724
            DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTAGQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA S +  +++GNK D+ D R VS E   K A D G+ F E SA +  NV+ AFF L ++I   +++K  +  +    GP  +  S+
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESR 195          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.669e-44
Identity = 85/190 (44.74%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSK 724
            DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTAGQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA S +  +++GNK D+ D R VS E   K A D G+ F E SA +  NV+ AFF L ++I   +++K  +  +    GP  +  S+
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESR 195          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.098e-44
Identity = 85/183 (46.45%), Postives = 126/183 (68.85%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 703
            DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTAGQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA S +  +++GNK D+ D R VS E   K A D G+ F EASA +  NV+ AFF L ++I   +++K  +  +    GP
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.964e-44
Identity = 86/176 (48.86%), Postives = 120/176 (68.18%), Query Frame = 2
Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R + I+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+A W+E+ R HA+ ++ I+LIGNK DL   RAV+ E+  +FA++ GL F E SA    NV+ AF    +EIY  +     +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.964e-44
Identity = 86/176 (48.86%), Postives = 120/176 (68.18%), Query Frame = 2
Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R + I+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+A W+E+ R HA+ ++ I+LIGNK DL   RAV+ E+  +FA++ GL F E SA    NV+ AF    +EIY  +     +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.040e-43
Identity = 84/183 (45.90%), Postives = 125/183 (68.31%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 703
            DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTAGQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA S +  +++GNK D+ D R VS E   K A D G+ F E SA +  NV+ AFF L ++I   +++K  +  +    GP
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGP 188          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.358e-43
Identity = 84/183 (45.90%), Postives = 125/183 (68.31%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 703
            DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTAGQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA S +  +++GNK D+ D R VS E   K A D G+ F E SA +  NV+ AFF L ++I   +++K  +  +    GP
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGP 188          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 121/176 (68.75%), Query Frame = 2
Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+ K IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+A W+E+ R HA++++ I+L+GNK DL   RAVS E+  +FA++ GL F EASA    NV+ AF +    IY  +     +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180          
The following BLAST results are available for this feature:
BLAST of CK935417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DICDI2.096e-4450.00Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB14_DICDI2.737e-4447.92Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB8B_RAT4.669e-4444.74Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE4.669e-4444.74Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_BOVIN6.098e-4446.45Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
YPTV4_VOLCA7.964e-4448.86GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE7.964e-4448.86GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB8B_PONAB1.040e-4345.90Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_HUMAN1.358e-4345.90Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB2B_MAIZE1.774e-4348.86Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935417 ID=CK935417; Name=CK935417; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGAGGAATATTTAAAAAGAATACATCCCCCTCCAGAGTGAGAATTT
TTTCTGGTGAAAGTGAAAAAAAGAAAAAAATGAACGAAGAAATGAGTGGC
GATGCCACCGATCATCGCCATCAACAACAAGAGAATATGATTCCTGACAA
AATAGACTATGTGTTCAAGGTAGTGGTGATCGGTGACTCGGCCGTGGGCA
AGTCTCAGATTCTTTCGAGATTCACCAAGAATGAGTTTTTCTTTGACTCG
AAATCAACCATTGGCGTCGAGTTCCAAACCAGAACTGTCACCATCAACGG
CAAGATCATCAAAGCCCAGATCTGGGACACTGCTGGCCAAGAAAGGTACC
GGGCGGTGACAAGTGCGTACTATAGAGGTGCCTTAGGGGCCGTAGTAGTG
TACGACATCACGAAACGACAGTCGTTTGATCATGTGGCTAGGTGGGTGGA
GGAACTGCGCGCTCATGCTGACAGCTCCATCAGGATCATACTGATTGGAA
ACAAATCTGATCTTGTGGATATGCGGGCAGTTTCGGCGGAGGATGCTGTT
AAGTTTGCAGAGGATCAAGGCTTGTTTTTCTCTGAGGCATCCGCACTTAA
TGGTGACAATGTGGATACTGCCTTTTTCAGGCTGCTCCAGGAAATTTACG
GCGCCGTTTCTAAGAAGGAATTGGAATGCGGCAACGGCAAAGTTGATGGG
CCGCCGATGCTTGCGGGTTCCAAGATTGATGTTATCTCTGGGGCTGATTT
GGAAATTAGTGAGATGAAGAAATTATCTACTTGCTCTTGTTGATTTTTCT
TTTTATTATTATTATTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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