CK935417 | Citrus Genome Database

Overview


Name	CK935417
Unique Name	CK935417
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	850

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK935417_ssr803	microsatellite	CK935417_ssr803:803..817.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1815	contig	Csv1_Contig1815:1..850.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.952e-43
Identity = 85/176 (48.30%), Postives = 118/176 (67.05%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      T+GVEF  R +TI+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +   +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.952e-43
Identity = 84/176 (47.73%), Postives = 122/176 (69.32%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            ++FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+ K IK QIWDTAGQE +R++T +YYRG+ GA++VYDIT+R +F+H+  W+++ R++A+S++ IILIGNKSD+   RAVS E+  +FA++ GL F E SA    NV+ AF     +IY  + K + +  N
Sbjct:    4 FLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINN 179

[Close]

BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.742e-43
Identity = 85/176 (48.30%), Postives = 120/176 (68.18%), Query Frame = 2

Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 685
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R + I+ K IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+A W+E+ R HA++++ I+L+GNK DL   RAVS E+  +FA++ GL F EASA    NV+ AF +    IY  +     +  N
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

The following BLAST results are available for this feature:

BLAST of CK935417 vs. ExPASy Swiss-Prot

BLAST of CK935417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB2A_RABIT	1.774e-43	48.86	Ras-related protein Rab-2A OS=Oryctolagus cuniculu...	[more]
RAB2A_PONAB	1.774e-43	48.86	Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2...	[more]
RAB2A_MOUSE	1.774e-43	48.86	Ras-related protein Rab-2A OS=Mus musculus GN=Rab2...	[more]
RAB2A_MACFA	1.774e-43	48.86	Ras-related protein Rab-2A OS=Macaca fascicularis ...	[more]
RAB2A_HUMAN	1.774e-43	48.86	Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2...	[more]
RAB2A_CHICK	1.774e-43	48.86	Ras-related protein Rab-2A OS=Gallus gallus GN=RAB...	[more]
RAB2A_CANFA	1.774e-43	48.86	Ras-related protein Rab-2A OS=Canis familiaris GN=...	[more]
RAB2A_RAT	3.952e-43	48.30	Ras-related protein Rab-2A OS=Rattus norvegicus GN...	[more]
RAB2A_DICDI	3.952e-43	47.73	Ras-related protein Rab-2A OS=Dictyostelium discoi...	[more]
RAB2A_MAIZE	6.742e-43	48.30	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004555_H11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK935417 ID=CK935417; Name=CK935417; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGAGGAATATTTAAAAAGAATACATCCCCCTCCAGAGTGAGAATTT
TTTCTGGTGAAAGTGAAAAAAAGAAAAAAATGAACGAAGAAATGAGTGGC
GATGCCACCGATCATCGCCATCAACAACAAGAGAATATGATTCCTGACAA
AATAGACTATGTGTTCAAGGTAGTGGTGATCGGTGACTCGGCCGTGGGCA
AGTCTCAGATTCTTTCGAGATTCACCAAGAATGAGTTTTTCTTTGACTCG
AAATCAACCATTGGCGTCGAGTTCCAAACCAGAACTGTCACCATCAACGG
CAAGATCATCAAAGCCCAGATCTGGGACACTGCTGGCCAAGAAAGGTACC
GGGCGGTGACAAGTGCGTACTATAGAGGTGCCTTAGGGGCCGTAGTAGTG
TACGACATCACGAAACGACAGTCGTTTGATCATGTGGCTAGGTGGGTGGA
GGAACTGCGCGCTCATGCTGACAGCTCCATCAGGATCATACTGATTGGAA
ACAAATCTGATCTTGTGGATATGCGGGCAGTTTCGGCGGAGGATGCTGTT
AAGTTTGCAGAGGATCAAGGCTTGTTTTTCTCTGAGGCATCCGCACTTAA
TGGTGACAATGTGGATACTGCCTTTTTCAGGCTGCTCCAGGAAATTTACG
GCGCCGTTTCTAAGAAGGAATTGGAATGCGGCAACGGCAAAGTTGATGGG
CCGCCGATGCTTGCGGGTTCCAAGATTGATGTTATCTCTGGGGCTGATTT
GGAAATTAGTGAGATGAAGAAATTATCTACTTGCTCTTGTTGATTTTTCT
TTTTATTATTATTATTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA