CK935417

Overview
NameCK935417
Unique NameCK935417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935417_ssr803 microsatellite CK935417_ssr803:803..817. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1815 contig Csv1_Contig1815:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.707e-42
Identity = 84/169 (49.70%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  158 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 664
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R V I+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+  W+E+ R H+ S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ A+    +EIY  + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.661e-41
Identity = 82/164 (50.00%), Postives = 117/164 (71.34%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W+ E+  +A  ++  +L+GNKSDL   R VS + A +FAE  G+ F E SA N  NV+ AF  +  +I
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.661e-41
Identity = 83/174 (47.70%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG +  GKS +L +F +N+F  DS  TIGVEF +R V + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +A W+ + R  A  +I +IL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  + I   +   EL+
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.661e-41
Identity = 83/174 (47.70%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG +  GKS +L +F +N+F  DS  TIGVEF +R V + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +A W+ + R  A  +I +IL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  + I   +   EL+
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.661e-41
Identity = 83/174 (47.70%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG +  GKS +L +F +N+F  DS  TIGVEF +R V + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +A W+ + R  A  +I +IL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  + I   +   EL+
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.661e-41
Identity = 83/174 (47.70%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 676
            D++FK +VIG +  GKS +L +F +N+F  DS  TIGVEF +R V + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +A W+ + R  A  +I +IL GNK DL   R V+  +A +FA++  L F E SAL G+NV+ AF +  + I   +   EL+
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.169e-41
Identity = 84/183 (45.90%), Postives = 123/183 (67.21%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 703
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RTV ++GK+IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W+ E+  +A  ++  +L+GNKSDL   + V    A  FA++ G+ F E SA N  NV+ AF  +  EI   ++ + +     K  GP
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT---KAGGP 185          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.833e-41
Identity = 81/164 (49.39%), Postives = 117/164 (71.34%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RTV ++GK+IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W+ E+  +A  ++  +L+GNKSDL   + V  + A  FA++ G+ F E SA N  NV+ AF  +  EI
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.699e-41
Identity = 88/214 (41.12%), Postives = 132/214 (61.68%), Query Frame = 2
Query:  146 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 787
            ++ DY+FK+++IGDS+VGKS  L RF  + +     STIGV+F+ RTV + GK +K QIWDTAGQER+R +TS+YYRGA G ++VYDIT  +SF++V +W++E+  +A+ S+R +L+GNK DL + RAV    A  +A++ G+ F E SA    NV+ AF  +      A  KK        ++  P    S +  + G  ++  + K    CS
Sbjct:    3 NEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAM-----SAAIKKSKAGSQAALERKP----SNVVQMKGRPIQQEQQKSSRCCS 207          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.699e-41
Identity = 82/164 (50.00%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  155 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 646
            DY+ K+++IGDS VGKS +L RF+++ F     +TIG++F+ RT+ ++GK IK QIWDTAGQER+R +T+AYYRGA+G +++YD+T ++SFD+V  W   +  HA  ++  ILIGNK D  D R VS E     A++ G+ F EASA    NVD AFF L +EI
Sbjct:    7 DYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
The following BLAST results are available for this feature:
BLAST of CK935417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_MOUSE5.707e-4249.70Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
YPT1_PHYIN1.661e-4150.00Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB4B_RAT1.661e-4147.70Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.661e-4147.70Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.661e-4147.70Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.661e-4147.70Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
YPTC1_CHLRE2.169e-4145.90GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPTV1_VOLCA2.833e-4149.39GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPTM1_MAIZE3.699e-4141.12GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT2_SCHPO3.699e-4150.00GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935417 ID=CK935417; Name=CK935417; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGAGGAATATTTAAAAAGAATACATCCCCCTCCAGAGTGAGAATTT
TTTCTGGTGAAAGTGAAAAAAAGAAAAAAATGAACGAAGAAATGAGTGGC
GATGCCACCGATCATCGCCATCAACAACAAGAGAATATGATTCCTGACAA
AATAGACTATGTGTTCAAGGTAGTGGTGATCGGTGACTCGGCCGTGGGCA
AGTCTCAGATTCTTTCGAGATTCACCAAGAATGAGTTTTTCTTTGACTCG
AAATCAACCATTGGCGTCGAGTTCCAAACCAGAACTGTCACCATCAACGG
CAAGATCATCAAAGCCCAGATCTGGGACACTGCTGGCCAAGAAAGGTACC
GGGCGGTGACAAGTGCGTACTATAGAGGTGCCTTAGGGGCCGTAGTAGTG
TACGACATCACGAAACGACAGTCGTTTGATCATGTGGCTAGGTGGGTGGA
GGAACTGCGCGCTCATGCTGACAGCTCCATCAGGATCATACTGATTGGAA
ACAAATCTGATCTTGTGGATATGCGGGCAGTTTCGGCGGAGGATGCTGTT
AAGTTTGCAGAGGATCAAGGCTTGTTTTTCTCTGAGGCATCCGCACTTAA
TGGTGACAATGTGGATACTGCCTTTTTCAGGCTGCTCCAGGAAATTTACG
GCGCCGTTTCTAAGAAGGAATTGGAATGCGGCAACGGCAAAGTTGATGGG
CCGCCGATGCTTGCGGGTTCCAAGATTGATGTTATCTCTGGGGCTGATTT
GGAAATTAGTGAGATGAAGAAATTATCTACTTGCTCTTGTTGATTTTTCT
TTTTATTATTATTATTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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