CK935439

Overview
NameCK935439
Unique NameCK935439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.674e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.674e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.674e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 84          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.674e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.674e-40
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.269e-38
Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 1
Query:  499 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPE FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 92          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 82/219 (37.44%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  112 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQ 762
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF VQ
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.395e-26
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAIV 771
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIV
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIV 90          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.395e-26
Identity = 73/172 (42.44%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  253 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEVFAELKVKEIKNGRLAMFSMFGFFVQ 762
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF VQ
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  265 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEVFAELKVKEIKNGRLAMFSMFGFFVQAI 768
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241          
The following BLAST results are available for this feature:
BLAST of CK935439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2F_SOLLC2.674e-4095.24Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.674e-4095.24Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.674e-4095.24Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.674e-4095.24Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.674e-4095.24Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA4.269e-3885.87Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU9.865e-2737.44Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_EUGGR6.395e-2671.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB11_SOLLC6.395e-2642.44Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC5.413e-2539.43Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_F06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935439 ID=CK935439; Name=CK935439; organism=Citrus sinensis; type=EST; length=773bp
GGGGAACCAACAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTACACAGC
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGAC
TACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCCTGATGGGAGCCGTTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGTTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCAC
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