CK935439

Overview
NameCK935439
Unique NameCK935439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:23..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 64/196 (32.65%), Postives = 82/196 (41.84%), Query Frame = 1
Query:  268 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEVFAELKVKEIKNGRLAMFSMFGFFVQA 765
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M  F+ +A
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 83/248 (33.47%), Postives = 100/248 (40.32%), Query Frame = 1
Query:  184 TGSKSVSSGSPWYGPDRVKYLGPLSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEVFA-ELKVKEIKNGRLAMFSMFGFFVQAI 768
            T   + S+G+   G    KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA + E  A  LK  EIK+ RLAM S FG+ VQA+
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQAL 257          
BLAST of CK935439 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 64/196 (32.65%), Postives = 83/196 (42.35%), Query Frame = 1
Query:  268 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEVFAELKVKEIKNGRLAMFSMFGFFVQA 765
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M  F+ +A
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249          
The following BLAST results are available for this feature:
BLAST of CK935439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4B_SOLLC3.292e-1432.65Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB29_CHLRE3.292e-1433.47Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL4.299e-1432.65Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_F06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935439 ID=CK935439; Name=CK935439; organism=Citrus sinensis; type=EST; length=773bp
GGGGAACCAACAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTACACAGC
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGAC
TACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCCTGATGGGAGCCGTTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGTTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCAC
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