CK935443

Overview
NameCK935443
Unique NameCK935443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.453e-25
Identity = 70/160 (43.75%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  313 SGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG---QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            SG H NPAVT   LVG +ISL R + Y  AQL G+TV   LL  VT G   +T     + +      AV  E+V+T  LV  V+A+ +D ++ +LG+ A + IG  V    L G  F G SMNPA SFGPA++   +  HW++WVGPL G  LA ++Y F
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFAS-MDSRQ-TLGSPAAM-IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNF 230          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.101e-24
Identity = 75/231 (32.47%), Postives = 113/231 (48.92%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA +AE ++TL+F++    + + +   T   A                              ISGGH+NPAVT G  +   +SL+R +LY +AQ LG+   C  +K   +   T     A  L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+ W++WVGP+IG   A   ++F
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQF 268          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.878e-24
Identity = 75/232 (32.33%), Postives = 114/232 (49.14%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 780
            RA +AE ++TL+F++    + + +   T   A+                               ISGGH+NPAVTFG  +   +SL+R ILY +AQ LG+     L+K   +         A  L++G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   S +W + W++WVGP IG  +A + ++
Sbjct:   36 RAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQ 266          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.463e-24
Identity = 79/233 (33.91%), Postives = 115/233 (49.36%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLK-FVTNGQTT---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 801
            RA +AE I+TL+F++    + +   K T  G                           ISGGH+NPAVTFG  +   +SL+R + Y IAQ LG+      +K F+     T    A  ++ G     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+ W++WVGP + G LA   Y  + +  S
Sbjct:   38 RALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFL-GALAAAAYHQYILRAS 266          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.135e-24
Identity = 77/238 (32.35%), Postives = 119/238 (50.00%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAF-NKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQL 813
            RA +AE ++TLIF++    + + + N+     A T                        +SGGH+NPAVT G   G  +SL+R +LY +AQ LG+     ++K +     +     A  +S G  A  A+  EIV TF LVYTV+ +A DPK+ +    +  + P+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP+IG  LA   ++     ++ + L
Sbjct:   44 RALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVF-SATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 77/231 (33.33%), Postives = 113/231 (48.92%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKF--------VTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA +AE I+TL+F++    + +     T  G                           ISGGH+NPAVTFG  +   +SL R + Y +AQ LG+     L+K         +  G  T A   S+G     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+HW++WVGP +G   A   +++
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTG----TALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQY 259          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 76/226 (33.63%), Postives = 112/226 (49.56%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG--QTT--SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 780
            RA +AE ++T +F++    + M  N  T   A                          ISGGH+NPAVTFG  +   +SL R + Y + Q LG+     ++K    G  +TT   A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA I ++
Sbjct:   54 RAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQ 276          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.590e-23
Identity = 68/161 (42.24%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  313 SGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG---QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIA-IGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            SG H NPAVT   LVG +ISL R + Y  AQL G+T    LL  VT G   +T     + +      AV  E+V+T  LV  V+A+      G     +P A IG  V    L G  F G SMNPA SFGPA++   +  HW++WVGPL G  LA ++Y F
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASM----DGRQTLASPAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNF 230          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.541e-23
Identity = 73/232 (31.47%), Postives = 115/232 (49.57%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTH---NGANTPSXXXXXXXXXXXXXXXXXXXXX---NISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLK----FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 780
            RA +AE ++TL+F++    + + +   T    NGA+                            +SGGH+NPAVT G  +   +SL+R +LY  AQ LG+     L+K     + +     A  L++G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   + +W + W++WVGP IG  +A + ++
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQ 269          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.541e-23
Identity = 75/225 (33.33%), Postives = 111/225 (49.33%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 777
            RA +AE ++T +F++    + M  +K +   A                          ISGGH+NPAVTFG  +   +SL R + Y + Q LG+     ++K        G    A A++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   S +W++HW++WVGP IG  LA I +
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYH 275          
The following BLAST results are available for this feature:
BLAST of CK935443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
AQP6_RAT6.453e-2543.75Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
PIP24_ARATH1.101e-2432.47Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ1.878e-2432.33Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP27_ARATH5.463e-2433.91Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP27_ORYSJ7.135e-2432.35Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH1.217e-2333.33Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP12_ORYSJ1.217e-2333.63Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
AQP6_MOUSE1.590e-2342.24Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
PIP24_ORYSJ3.541e-2331.47Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP15_MAIZE3.541e-2333.33Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935443 ID=CK935443; Name=CK935443; organism=Citrus sinensis; type=EST; length=859bp
GGGGGACCAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTT
CAATCTTCATCGTTTGTTCTCCATCATGCCGATCAGAAACATTGCCGTTG
GCCATCCCCGTGAGGCGATTCACCCAGATGCCCTAAGGGCAGCCCTAGCA
GAGCTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCAT
GGCCTTCAACAAGCTCACTCACAACGGCGCCAATACCCCCTCCGGCCTCG
TCGCCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTT
GGCGCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGC
CCTCGTTGGAGGTAACATCTCCCTTCTACGTGGCATCCTCTACTGGATCG
CCCAGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACC
AACGGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATG
GAACGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAG
TGTATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCA
CCAATTGCAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGC
GTTTGATGGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGG
TGAGCTGGAGCTGGGACAACCACTGGGTCTACTGGGTCGGGCCACTCATC
GGTGGTGGGCTAGCTGGCATCGTCTACGAGTTCTTCTTCATTAACCAGTC
GCATGAGCAGCTCCCAACAACCGAGTACTAAGCTAAAAGCTTGCCATCTA
TGTGAGTTT
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