CK935443

Overview
NameCK935443
Unique NameCK935443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:80..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.694e-33
Identity = 85/219 (38.81%), Postives = 115/219 (52.51%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE  +TL +VF G GS + +       A  P                      +ISG HVNPAVTF  LVG  +SLLR   Y  AQLLG+     +L  VT        AL++    V    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE  +TL +VF G GS + +       A  P                      +ISG HVNPAVTF  LVG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 219          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 86/219 (39.27%), Postives = 117/219 (53.42%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE  +TL +VF G G+ + +       A  P               X      +ISG HVNPAVTF  LVG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.890e-33
Identity = 83/219 (37.90%), Postives = 117/219 (53.42%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE   T+ +VF G G+ + +       A  P+                     ++SG H+NPAVTF  L+G  +SL R I Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G  + GASMNPA SF PA+++ ++ NHWVYWVGP+IGG L G+VY+F
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNHWVYWVGPIIGGALGGLVYDF 221          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.890e-33
Identity = 84/219 (38.36%), Postives = 118/219 (53.88%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE  ++L +VF G G+ + +       A  P                      +ISG HVNPAVTF  LVG  +SLLR I Y +AQLLG+     +L  VT        AL++   GV    A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 84/219 (38.36%), Postives = 116/219 (52.97%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE  +TL +VF G G+ + +       A  P                      +ISG HVNPAVTF  LVG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 84/219 (38.36%), Postives = 115/219 (52.51%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 783
            RA  AE  +TL +VF G G+ + +          P                      +ISG HVNPAVTF  LVG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 80/227 (35.24%), Postives = 119/227 (52.42%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 807
            RA +AE ++T +FVF   GS + F     N                           +ISG H+NPAVT G L+   IS+ R ++Y IAQ +G+ VA  +L  +T+  T ++     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31
Identity = 79/227 (34.80%), Postives = 117/227 (51.54%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN---GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 807
            RA +AE ++  +FVF   GS + F     N                           +ISG H+NPAVT G L+   IS+ R ++Y IAQ +G+ VA  +L  +T+   G +     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CK935443 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31
Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 1
Query:  136 RAALAELISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 807
            RA +AE ++  +FVF   GS + FN                                +ISG H+NPAVT G L+   IS+LR ++Y IAQ +G+ VA  +L  +T+    ++     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
The following BLAST results are available for this feature:
BLAST of CK935443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
MIP_HUMAN1.694e-3338.81Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_RAT2.213e-3338.81Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_CAVPO2.213e-3339.27Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_RANPI2.890e-3337.90Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_BOVIN2.890e-3338.36Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_MOUSE4.930e-3338.36Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_CANFA4.930e-3338.36Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP1_HUMAN1.098e-3235.24Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_PONAB1.214e-3134.80Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE1.214e-3134.80Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004555_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935443 ID=CK935443; Name=CK935443; organism=Citrus sinensis; type=EST; length=859bp
GGGGGACCAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTT
CAATCTTCATCGTTTGTTCTCCATCATGCCGATCAGAAACATTGCCGTTG
GCCATCCCCGTGAGGCGATTCACCCAGATGCCCTAAGGGCAGCCCTAGCA
GAGCTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCAT
GGCCTTCAACAAGCTCACTCACAACGGCGCCAATACCCCCTCCGGCCTCG
TCGCCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTT
GGCGCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGC
CCTCGTTGGAGGTAACATCTCCCTTCTACGTGGCATCCTCTACTGGATCG
CCCAGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACC
AACGGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATG
GAACGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAG
TGTATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCA
CCAATTGCAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGC
GTTTGATGGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGG
TGAGCTGGAGCTGGGACAACCACTGGGTCTACTGGGTCGGGCCACTCATC
GGTGGTGGGCTAGCTGGCATCGTCTACGAGTTCTTCTTCATTAACCAGTC
GCATGAGCAGCTCCCAACAACCGAGTACTAAGCTAAAAGCTTGCCATCTA
TGTGAGTTT
back to top