CK935446

Overview
NameCK935446
Unique NameCK935446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 2
Query:  350 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 511
            LAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 2
Query:  350 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 511
            LAVLQFYKVDD+ GKV RLRKECPN +CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 2
Query:  350 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 511
            LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 511
            LAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   59 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   59 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   59 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   59 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK935446 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   53 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CK935446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RS27A_ASPOF5.248e-2494.3440S ribosomal protein S27a OS=Asparagus officinali... [more]
RS27A_HORVU1.293e-2291.0740S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_ORYSJ6.416e-2289.2940S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE6.416e-2289.2940S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
R27AA_ARATH2.438e-2181.4840S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
RUB1_DESAN2.064e-2064.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ2.696e-2063.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.696e-2063.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.696e-2063.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME3.520e-2059.21NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935446 ID=CK935446; Name=CK935446; organism=Citrus sinensis; type=EST; length=715bp
GGGGATCCTTTCATTTCACTGAAATTTGCTGGGTCTCTCCTCATCTGCAG
CCATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAG
GTCGAATCATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAA
GGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGC
TCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACA
CTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAA
GACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGC
TCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGG
CTGAGGAAGGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGC
TAACCACTTTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTT
ACCAGAAGGCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATT
TTTAATTAGTATTAATTACTATGGTTTTTGTGGTTCAAAAATTATGACTC
TTTCGTAATTTTGTTTGACTATATACTTGTTTGCTTGAGCGTTTTAATTA
AATGGTTATCTGTTTTAAATTTTAAAAAAAAAAAGGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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