CK935460

Overview
NameCK935460
Unique NameCK935460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935460_ssr618 microsatellite CK935460_ssr618:618..632. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:87..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.000e-26
Identity = 77/192 (40.10%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  205 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYFAYLVFQL 777
            L +I+ VI  +KL++L P  P +II          VF  S+LG+TPLAER+ + TEQ+A YTGPT GGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+Q + +  A VNS                 +    S++   A+ + LSR SS +ML+ Y +YL FQL
Sbjct:   41 LRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHF--THSEVRQGASEVSLSRFSSCIMLVAYASYLYFQL 230          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18
Identity = 69/186 (37.10%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  223 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTE-QIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQL 777
            V L +KL+VL P   LAI          WVF LS+LG+ PLAER+ F T+ QI+       G LLN+  GNATELII+I AL   K+ VV+                   F GG+A  +  Q + +  A VNS                 Y  + +    K+ L LSR SS +ML+ Y +YL FQL
Sbjct:   67 VFLKSKLNVLIPCGFLAIFLNYMTQRYGWVFPLSMLGIIPLAERLGFATDWQISCEV----GRLLNSAFGNATELIISIHALSRGKLHVVQQCLLGSILSNLLLVLGSAFFSGGLACGKTMQTFSKADAVVNSGLLLMAVMGLLIPAALHYTHSEAQF-GKSELALSRFSSCIMLVAYASYLYFQL 247          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 51/187 (27.27%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  217 QEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQL 777
            + V++ +  +++   +P+ +I   F +    VF L++L + PLA  +SF TEQ++  +GPT G LLNA+ GNA ELI+ + AL   ++ +V+                      GI   R+   ++   A                   F Y+   +  +  A L +SR +++++LI Y   LVFQL
Sbjct:   54 KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISGPTLGALLNASFGNAIELIVGVLALKRGELRIVQSSLLGSILSNLLLVFGMCLVTTGIR--REITTFNITVAQTMIAMLALSTATILIPATFHYSLPDNANSENALLHVSRGTAVIVLIVYVLLLVFQL 238          
The following BLAST results are available for this feature:
BLAST of CK935460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX3_ORYSJ5.000e-2640.10Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX4_ORYSJ8.548e-1837.10Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
VCX1_SCHPO2.846e-1327.27Vacuolar calcium ion transporter OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935460 ID=CK935460; Name=CK935460; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTTCTTTCAATTGCATTTGCGAAAAAATGGCTTCGAC
TGAACCATGGCTGATGGAGAATGGCATCGTGAAGGTTTTGAGCAAGGAGA
TCAGACATGGAAGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAA
AAATCCGATCTTACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTAGACG
GTGTCTGGCTAATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTC
TCTTTCCCGCCATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCA
GAACCATGGGTATTCGCTCTGAGCTTACTCGGACTGACTCCTCTGGCTGA
ACGTGTCAGCTTCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAG
GGGGGGGATTATTGAACGCGACATGCGGCAATGCCACGGAGCTTATCATA
GCAATTTTCGCCCTATACGGACGTAAAATTGACGTGGTCAAATATTCTCT
TTTGGGTTCCATTCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCT
TCTGTGGAGGCATTGCCAATCTCAGAAAGGAACAAAAATACGATAGAAAA
CAAGCCGATGTCAACTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACAT
GCTACCATTGCTATTCAAATACGCTGCGGCCTCCTCTGATATTACTGCCA
AGGCGACCCTTCAGCTATCAAGAGCCAGCAGCATTGTAATGCTGATTGGT
TACTTCGCCTATCTCGTCTTCCAATTGTGG
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