CK935461 | Citrus Genome Database

Overview


Name	CK935461
Unique Name	CK935461
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	522

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:788..1309.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_PANGI (Photosystem II reaction center protein I OS=Panax ginseng GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_OLIPU (Photosystem II reaction center protein I OS=Olimarabidopsis pumila GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_OENPA (Photosystem II reaction center protein I OS=Oenothera parviflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_OENGL (Photosystem II reaction center protein I OS=Oenothera glazioviana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_OENEH (Photosystem II reaction center protein I OS=Oenothera elata subsp. hookeri GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_OENBI (Photosystem II reaction center protein I OS=Oenothera biennis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_OENAR (Photosystem II reaction center protein I OS=Oenothera argillicola GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_NYMAL (Photosystem II reaction center protein I OS=Nymphaea alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_NICTO (Photosystem II reaction center protein I OS=Nicotiana tomentosiformis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_NICSY (Photosystem II reaction center protein I OS=Nicotiana sylvestris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK935461 vs. ExPASy Swiss-Prot

BLAST of CK935461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_PANGI	1.288e-13	100.00	Photosystem II reaction center protein I OS=Panax ...	[more]
PSBI_OLIPU	1.288e-13	100.00	Photosystem II reaction center protein I OS=Olimar...	[more]
PSBI_OENPA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENGL	1.288e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENEH	1.288e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENBI	1.288e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENAR	1.288e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_NYMAL	1.288e-13	100.00	Photosystem II reaction center protein I OS=Nympha...	[more]
PSBI_NICTO	1.288e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_NICSY	1.288e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004555_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK935461 ID=CK935461; Name=CK935461; organism=Citrus sinensis; type=EST; length=522bp
GGGTGTGAATTTAATTTATGAAAACGATTTTCTNNNTAGAGAATCAAATT
CTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAAAA
ATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA