CK935461 | Citrus Genome Database

Overview


Name	CK935461
Unique Name	CK935461
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	522

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_LACSA (Photosystem II reaction center protein I OS=Lactuca sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_IPOPU (Photosystem II reaction center protein I OS=Ipomoea purpurea GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ILLOL (Photosystem II reaction center protein I OS=Illicium oligandrum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_HORVU (Photosystem II reaction center protein I OS=Hordeum vulgare GN=psbI PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_HELAN (Photosystem II reaction center protein I OS=Helianthus annuus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_GUIAB (Photosystem II reaction center protein I OS=Guizotia abyssinica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_GOSHI (Photosystem II reaction center protein I OS=Gossypium hirsutum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_GOSBA (Photosystem II reaction center protein I OS=Gossypium barbadense GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_FAGEA (Photosystem II reaction center protein I OS=Fagopyrum esculentum subsp. ancestrale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_EUCGG (Photosystem II reaction center protein I OS=Eucalyptus globulus subsp. globulus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK935461 vs. ExPASy Swiss-Prot

BLAST of CK935461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_LACSA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Lactuc...	[more]
PSBI_IPOPU	1.288e-13	100.00	Photosystem II reaction center protein I OS=Ipomoe...	[more]
PSBI_ILLOL	1.288e-13	100.00	Photosystem II reaction center protein I OS=Illici...	[more]
PSBI_HORVU	1.288e-13	100.00	Photosystem II reaction center protein I OS=Hordeu...	[more]
PSBI_HELAN	1.288e-13	100.00	Photosystem II reaction center protein I OS=Helian...	[more]
PSBI_GUIAB	1.288e-13	100.00	Photosystem II reaction center protein I OS=Guizot...	[more]
PSBI_GOSHI	1.288e-13	100.00	Photosystem II reaction center protein I OS=Gossyp...	[more]
PSBI_GOSBA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Gossyp...	[more]
PSBI_FAGEA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Fagopy...	[more]
PSBI_EUCGG	1.288e-13	100.00	Photosystem II reaction center protein I OS=Eucaly...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004555_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK935461 ID=CK935461; Name=CK935461; organism=Citrus sinensis; type=EST; length=522bp
GGGTGTGAATTTAATTTATGAAAACGATTTTCTNNNTAGAGAATCAAATT
CTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAAAA
ATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA