CK935461 | Citrus Genome Database

Overview


Name	CK935461
Unique Name	CK935461
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	522

Libraries


Library Name	Type
Developing fruit 24 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_DRIGR (Photosystem II reaction center protein I OS=Drimys granadensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_DRANE (Photosystem II reaction center protein I OS=Draba nemorosa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_DIOEL (Photosystem II reaction center protein I OS=Dioscorea elephantipes GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_DAUCA (Photosystem II reaction center protein I OS=Daucus carota GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_CUCSA (Photosystem II reaction center protein I OS=Cucumis sativus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_CRUWA (Photosystem II reaction center protein I OS=Crucihimalaya wallichii GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_COFAR (Photosystem II reaction center protein I OS=Coffea arabica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_CITSI (Photosystem II reaction center protein I OS=Citrus sinensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_CHLSC (Photosystem II reaction center protein I OS=Chloranthus spicatus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_CERDE (Photosystem II reaction center protein I OS=Ceratophyllum demersum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK935461 vs. ExPASy Swiss-Prot

BLAST of CK935461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_DRIGR	1.288e-13	100.00	Photosystem II reaction center protein I OS=Drimys...	[more]
PSBI_DRANE	1.288e-13	100.00	Photosystem II reaction center protein I OS=Draba ...	[more]
PSBI_DIOEL	1.288e-13	100.00	Photosystem II reaction center protein I OS=Diosco...	[more]
PSBI_DAUCA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Daucus...	[more]
PSBI_CUCSA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Cucumi...	[more]
PSBI_CRUWA	1.288e-13	100.00	Photosystem II reaction center protein I OS=Crucih...	[more]
PSBI_COFAR	1.288e-13	100.00	Photosystem II reaction center protein I OS=Coffea...	[more]
PSBI_CITSI	1.288e-13	100.00	Photosystem II reaction center protein I OS=Citrus...	[more]
PSBI_CHLSC	1.288e-13	100.00	Photosystem II reaction center protein I OS=Chlora...	[more]
PSBI_CERDE	1.288e-13	100.00	Photosystem II reaction center protein I OS=Cerato...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004555_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK935461 ID=CK935461; Name=CK935461; organism=Citrus sinensis; type=EST; length=522bp
GGGTGTGAATTTAATTTATGAAAACGATTTTCTNNNTAGAGAATCAAATT
CTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAAAA
ATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA