CK935461

Overview
NameCK935461
Unique NameCK935461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
The following BLAST results are available for this feature:
BLAST of CK935461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_AETGR1.288e-13100.00Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_AETCO1.288e-13100.00Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_ACOCL1.288e-13100.00Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_ACOAM1.288e-13100.00Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_SILLA2.869e-1397.22Photosystem II reaction center protein I OS=Silene... [more]
PSBI_PIPCE2.869e-1397.22Photosystem II reaction center protein I OS=Piper ... [more]
PSBI_ORYSJ2.869e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSI2.869e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSA2.869e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYNI2.869e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935461 ID=CK935461; Name=CK935461; organism=Citrus sinensis; type=EST; length=522bp
GGGTGTGAATTTAATTTATGAAAACGATTTTCTNNNTAGAGAATCAAATT
CTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAAAA
ATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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