CK935471

Overview
NameCK935471
Unique NameCK935471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 3
Query:   15 EKGENNAVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            E G    +TA GRT+P   +GF+F NCL+ GT                +LGRPW+ YSR +F + NL  +V P+GW  W+       L + E    G G+    RV W  ++    +   +  +FI    W+
Sbjct:  210 EPGLAGYITAQGRTNPYDANGFIFINCLVYGTG-------------MAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKWVKKLSESAIQNLADLSFINRGGWV 328          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 37/125 (29.60%), Postives = 63/125 (50.40%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            + AH      + SG+ F +C + GT   +            YLGR W  + + V+ +  + ++V+P GW         KT++YGE++ +GPGS  A RVP++  I  +  N +    +IQG +W+
Sbjct:  243 IAAHAGKSAEEKSGYSFVHCKVTGTGGGI------------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVPFTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 37/125 (29.60%), Postives = 63/125 (50.40%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            + AH      + SG+ F +C + GT   +            YLGR W  + + V+ +  + ++V+P GW         KT++YGE++ +GPGS  A RVP++  I  +  N +    +IQG +W+
Sbjct:  243 IAAHAGKSAEEKSGYSFVHCKVTGTGGGI------------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVPFTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 39/126 (30.95%), Postives = 61/126 (48.41%), Query Frame = 3
Query:   33 AVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            ++TAH R    + +G+VF    + G +E              YLGR    YSR +F    L   V PDGW  WS   + + LY+GE++  GPG++   R  W+  +  + V ++   +FI G  W+
Sbjct:  224 SITAHHRESAEEKTGYVFIRGKVYGIDEV-------------YLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWAKDLTKQEVESFLSIDFIDGTSWL 336          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 36/125 (28.80%), Postives = 60/125 (48.00%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            +TA GR    + +G+ F +C + GT   +            YLGR W  + + V+    + ++V+P GW         KT++YGE++  GPGS    RVP++  I    V  +    +I+G  W+
Sbjct:  243 ITAQGRQSATEQNGYTFVHCKVTGTGTGI------------YLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVPYTQDIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 40/126 (31.75%), Postives = 58/126 (46.03%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWIS 413
            +TA GR  P    GFVF++C + G+              K  LGR WK YSR +F        + P GW  W        + + EF  TG G+ T+ RVPW ++   + V  ++   FI  + W+S
Sbjct:  221 ITAQGRDSPTDKGGFVFKDCTVMGSG-------------KALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPWLTKASEKDVLQFTNLTFIDEEGWLS 333          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 38/128 (29.69%), Postives = 60/128 (46.88%), Query Frame = 3
Query:   33 AVTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDF-ALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWIS 413
            ++ AHGRT P + +GF F  C + GT                Y+GR   +YSR V+ +   +ALV   GW  W       KT ++G +   GPG+     V W+  +  E  + +  ++F+ G  WI+
Sbjct:  244 SIAAHGRTCPEEKTGFAFVGCRVTGTGPL-------------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWARALDYESAHPFIAKSFVNGRHWIA 358          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 37/125 (29.60%), Postives = 61/125 (48.80%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            +TA+G+      +GFVF NC I G+                +LGR W+ Y+R +F    +  +V  DGW         +T+YYGE +  GPG+  + RV ++  +       ++  +FI G+EW+
Sbjct:  222 ITANGKDTLKDRTGFVFVNCKITGSARV-------------WLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVTYAKLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 34/125 (27.20%), Postives = 60/125 (48.00%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            + AH R    + +G+ F +C + G    +            YLGR W  + + V+ +  + ++V+P GW         KT++YGE+  TGPGS  A RV  +  I  +  + +    +I+G +W+
Sbjct:  243 IAAHNRQSTTEQNGYSFVHCKVTGVGTGI------------YLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRVAHTQDIDNKEASQFLTLGYIKGSKWL 355          
BLAST of CK935471 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 36/125 (28.80%), Postives = 60/125 (48.00%), Query Frame = 3
Query:   36 VTAHGRTDPAQWSGFVFQNCLINGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKTLYYGEFQNTGPGSKTANRVPWSSQIPAEHVNAYSVQNFIQGDEWI 410
            +TAH     A+ SG+ F +C + GT   +            YLGR W  + + V+ + ++ ++V+P GW         KT++YGE++ TG GS    RV ++  I       +    +IQG  W+
Sbjct:  220 ITAHAGKSAAEKSGYSFVHCKVTGTGTGI------------YLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVKYTQDIDDIEAKYFISLGYIQGSSWL 332          
The following BLAST results are available for this feature:
BLAST of CK935471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PME29_ARATH1.383e-1331.82Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME48_ARATH3.081e-1329.60Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PPME1_ARATH4.024e-1329.60Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME67_ARATH6.864e-1330.95Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME50_ARATH1.529e-1228.80Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME10_ARATH1.997e-1231.75Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME68_ARATH4.449e-1229.69Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME14_ARATH7.589e-1229.60Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME49_ARATH2.208e-1127.20Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME63_ARATH2.884e-1128.80Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_D05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935471 ID=CK935471; Name=CK935471; organism=Citrus sinensis; type=EST; length=820bp
GGGAATTAAAGCCGGAGAAAGGTGAGAACAATGCAGTGACTGCTCATGGC
AGAACGGACCCTGCTCAATGGTCAGGTTTCGTTTTCCAGAACTGTTTGAT
CAACGGCACCGAGGAGTACATGAAATTATATTATAGTAAGCCTCGTGTGC
ACAAGAATTACTTGGGGAGGCCATGGAAAGAGTACTCGAGAACTGTTTTT
ATTCACTGTAACTTAGAAGCTCTTGTACATCCAGACGGGTGGCTGCCTTG
GAGCGGTGATTTTGCTTTGAAAACGCTTTACTATGGTGAATTCCAAAATA
CTGGACCCGGGTCTAAGACGGCTAATAGAGTTCCGTGGAGTTCCCAAATT
CCTGCAGAGCATGTTAATGCATATTCGGTGCAGAATTTTATCCAAGGTGA
TGAATGGATTTCGACATCATCTTAATTGCTGCACGCAATAGCAGAATCTG
CTGATTTTTCTTGTACAATTTGTATACCGTGGCTTAAATGATTAAATGAT
TGGGGACTATGGAAATATTTCCCTTTACTGATTTTCTATAAACATTAGTG
TAGTATGATGTAGGCCACATATGTTGCTTGACTTGAAGGCAAAGATGCCA
ATGTGACAAGGCATTAAGTTGAGCTTGTAGCACAAAACGTAATGTCATTC
TATCTGTCAATGTACTATTTTTTCAGCTTTATGAGATGGAGAATGGAGAT
GTACAGCTTAGAGCCTTAATATGATTAAGACTCCGCAATAATGGAAATGA
GTGGTGGGGGAAGCAGCTTCTGCATTTTCTTCTCCTTAAACAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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