CK935475

Overview
NameCK935475
Unique NameCK935475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:1..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44P_CANMA (60S ribosomal protein L44 P OS=Candida maltosa GN=L41P1A PE=3 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.190e-43
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT+KTYCK +ECRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_PICGU (60S ribosomal protein L44 OS=Pichia guilliermondii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.554e-43
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT++TYCK K+CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRRTYCKGKDCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_YEAST (60S ribosomal protein L42 OS=Saccharomyces cerevisiae GN=RPL42A PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.523e-43
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_YARLI (60S ribosomal protein L44 OS=Yarrowia lipolytica GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.008e-42
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVN+PKT+ TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTK +FHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKQIFHKKAKTTKKVVLRLECVKCKVKMQLALKRCKHFELGGDKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_SCHPO (60S ribosomal protein L44 OS=Schizosaccharomyces pombe GN=rpl44 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.008e-42
Identity = 76/104 (73.08%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVN+PKT+KTYC  K CRKHT+H+VTQYKKG DS  AQGKRRYDRKQSG+GGQTKPVFHKKAK TKK+VLRL+C  CK+ +Q  +KRCKHFE+GG+KK KG ++
Sbjct:    1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAI 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_KLULA (60S ribosomal protein L44 OS=Kluyveromyces lactis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.008e-42
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT+KTYCK KECRKH  HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKECRKHAQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_DEBOC (60S ribosomal protein L44 OS=Debaryomyces occidentalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.008e-42
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTK +FHKKAKTTKK+VL+L+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQRGYGGQTKQIFHKKAKTTKKVVLKLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_ASHGO (60S ribosomal protein L44 OS=Ashbya gossypii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.245e-42
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +F KKAKTTKK+VLRL+C  CK  +Q P+KRCKHFE+GG+KK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKACRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKQIFRKKAKTTKKVVLRLECLSCKTKAQLPLKRCKHFELGGEKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_KLUMA (60S ribosomal protein L44 OS=Kluyveromyces marxianus GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.829e-42
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVNVPKT+KTYCK K CRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKACRKHSQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKGQAL 104
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44Q_CANMA (60S ribosomal protein L44 Q OS=Candida maltosa GN=RIM-C PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.001e-42
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVN+PKT+ TYCK K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG +L
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQAL 104
The following BLAST results are available for this feature:
BLAST of CK935475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44P_CANMA1.190e-4377.8860S ribosomal protein L44 P OS=Candida maltosa GN=... [more]
RL44_PICGU1.554e-4377.8860S ribosomal protein L44 OS=Pichia guilliermondii... [more]
RL44_YEAST4.523e-4377.8860S ribosomal protein L42 OS=Saccharomyces cerevis... [more]
RL44_YARLI1.008e-4276.9260S ribosomal protein L44 OS=Yarrowia lipolytica G... [more]
RL44_SCHPO1.008e-4273.0860S ribosomal protein L44 OS=Schizosaccharomyces p... [more]
RL44_KLULA1.008e-4275.9660S ribosomal protein L44 OS=Kluyveromyces lactis ... [more]
RL44_DEBOC1.008e-4276.9260S ribosomal protein L44 OS=Debaryomyces occident... [more]
RL44_ASHGO2.245e-4275.9660S ribosomal protein L44 OS=Ashbya gossypii GN=RP... [more]
RL44_KLUMA3.829e-4275.0060S ribosomal protein L44 OS=Kluyveromyces marxian... [more]
RL44Q_CANMA5.001e-4275.0060S ribosomal protein L44 Q OS=Candida maltosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_C02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935475 ID=CK935475; Name=CK935475; organism=Citrus sinensis; type=EST; length=589bp
GGGGGAGTCTCTAGTTACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCT
CTCTCGTCGTCGCCGCAGTCGGCCATCATGGTGAATGTTCCCAAGACTAA
GAAGACTTACTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGG
TGACACAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGA
CGGTATGATCGCAAGCAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTT
CCACAAGAAGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCC
AGGGTTGCAAGCATGTGTCTCAACATCCCATCAAGAGGTGCAAGCACTTT
GAAATTGGTGGAGACAAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCC
TTTATTTTTGTTTTTATGCTTTTTACTTTGCTGCACTTGATGGAACATTA
CCCAGTATGAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGT
TAATTTAAAACTTGAAGCGGTTGTTTGTTAAGTGCTTATTATATCAGTTA
ATTTTATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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