CK935475

Overview
NameCK935475
Unique NameCK935475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:1..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL36A_HUMAN (60S ribosomal protein L36a OS=Homo sapiens GN=RPL36A PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 380
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL36A_BOVIN (60S ribosomal protein L36a OS=Bos taurus GN=RPL36A PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 380
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_AEDTR (60S ribosomal protein L44 OS=Aedes triseriatus GN=RpL44 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 9.759e-38
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 380
            MVNVPK ++TYCK  +C+ H +HKVTQYKK K+  A+QG+RRYDRKQ G+GGQTKP+F KKAKTTKKIVLR++C  CK+  Q P+KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKQRRTYCK--KCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKKAKTTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKG 99          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL36L_HUMAN (60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 9.759e-38
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 380
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL36L_PONAB (60S ribosomal protein L36a-like OS=Pongo abelii GN=RPL36AL PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.839e-37
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 380
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRK+SGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKRSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_PLAF7 (60S ribosomal protein L44 OS=Plasmodium falciparum (isolate 3D7) GN=RPL44 PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.134e-36
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 392
            MVNVPKT+KTYC +K C+KHT+HKV+QYKKGK+ L++ G+RRYD KQ G+GGQTKPVF KKAKTTKKIVL+L+C  CK      +KRCK FE+G DKK KG +++
Sbjct:    1 MVNVPKTRKTYCSNK-CKKHTMHKVSQYKKGKERLSSLGRRRYDMKQKGFGGQTKPVFKKKAKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMGADKKKKGGAVY 104          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL36A_DICDI (60S ribosomal protein L36a OS=Dictyostelium discoideum GN=rpl36a PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.134e-36
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVN+PK +KT+C   +C KHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKKIVLR++C  C +  Q  +KRCK FE+GG+KK K  ++
Sbjct:    1 MVNIPKARKTHCV--KCNKHTPHKVTQYKAGKPSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMEC-SCGYKKQQVLKRCKRFELGGEKKSKNEAI 101          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL36A_PAPAN (60S ribosomal protein L36a OS=Papio anubis GN=RPL36A PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.838e-34
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 380
            MVNVPKT++T+CK  +  KH  HKVTQYKKGKDSL A GKRRYDRKQSGYGG TKP+F KKAKTTKKIVLRL+C    C+       KRCKHFE+GGDK  KG
Sbjct:    1 MVNVPKTRQTFCKKYD--KHQPHKVTQYKKGKDSLYALGKRRYDRKQSGYGGHTKPIFWKKAKTTKKIVLRLECVEPNCRSERMLATKRCKHFELGGDKTRKG 101          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_TRYBB (60S ribosomal protein L44 OS=Trypanosoma brucei brucei GN=RPL44 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.106e-32
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 371
            MVN PK KK +C  + C  H   KV QYK GK  L A+GKRRYDRKQSGYGGQTKP+FHKKAKTTKKIVL+LQC  CK + Q+ +KR KHFE+   KK
Sbjct:    1 MVNYPKKKKMHCPDERCNAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELNDKKK 98          
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_ENCCU (60S ribosomal protein L44 OS=Encephalitozoon cuniculi GN=RPL44 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 3
Query:   78 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 389
            MVN+PKT+ T+CK  +C+ ++ HKV+Q KK KD+  AQG RRY RKQ GYGGQTKP+  +KAK TKK+VL L+C  CK   Q P+KR KH   GG++K KG +L
Sbjct:    1 MVNIPKTRNTFCK--KCKGYSAHKVSQAKKSKDNPRAQGNRRYARKQRGYGGQTKPILRRKAKVTKKLVLNLECTKCKFSHQKPLKRAKHVIFGGERKRKGEAL 102          
The following BLAST results are available for this feature:
BLAST of CK935475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL36A_HUMAN4.381e-3874.7660S ribosomal protein L36a OS=Homo sapiens GN=RPL3... [more]
RL36A_BOVIN4.381e-3874.7660S ribosomal protein L36a OS=Bos taurus GN=RPL36A... [more]
RL44_AEDTR9.759e-3869.3160S ribosomal protein L44 OS=Aedes triseriatus GN=... [more]
RL36L_HUMAN9.759e-3873.7960S ribosomal protein L36a-like OS=Homo sapiens GN... [more]
RL36L_PONAB2.839e-3772.8260S ribosomal protein L36a-like OS=Pongo abelii GN... [more]
RL44_PLAF79.134e-3665.7160S ribosomal protein L44 OS=Plasmodium falciparum... [more]
RL36A_DICDI9.134e-3668.2760S ribosomal protein L36a OS=Dictyostelium discoi... [more]
RL36A_PAPAN3.838e-3469.9060S ribosomal protein L36a OS=Papio anubis GN=RPL3... [more]
RL44_TRYBB2.106e-3265.3160S ribosomal protein L44 OS=Trypanosoma brucei br... [more]
RL44_ENCCU3.717e-2956.7360S ribosomal protein L44 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_C02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935475 ID=CK935475; Name=CK935475; organism=Citrus sinensis; type=EST; length=589bp
GGGGGAGTCTCTAGTTACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCT
CTCTCGTCGTCGCCGCAGTCGGCCATCATGGTGAATGTTCCCAAGACTAA
GAAGACTTACTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGG
TGACACAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGA
CGGTATGATCGCAAGCAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTT
CCACAAGAAGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCC
AGGGTTGCAAGCATGTGTCTCAACATCCCATCAAGAGGTGCAAGCACTTT
GAAATTGGTGGAGACAAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCC
TTTATTTTTGTTTTTATGCTTTTTACTTTGCTGCACTTGATGGAACATTA
CCCAGTATGAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGT
TAATTTAAAACTTGAAGCGGTTGTTTGTTAAGTGCTTATTATATCAGTTA
ATTTTATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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