CK935475

Overview
NameCK935475
Unique NameCK935475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:1..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_THEAC (50S ribosomal protein L44E OS=Thermoplasma acidophilum GN=rpl44e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 3 
Query:   81 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 356
            + +PK   TYC    C+KHT H V + +K K S    G+RR+ R  SGYGG  +P F  + K TK+I LRL C  C      P  R K FEI
Sbjct:    1 MKMPKKIMTYCPY--CKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREKPTKRIALRLVCDECHKAITPPGIRAKKFEI 90
[Close]
BLAST of CK935475 vs. ExPASy Swiss-Prot
Match: RL44_AERPE (50S ribosomal protein L44E OS=Aeropyrum pernix GN=rpl44e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:   90 PKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGC 308
            PK  +TYC    C  HT H+V QY+ GK    A G+RRY RKQ GYG Q +P   + AK TKK VL + C  C
Sbjct:    4 PKRIRTYCP--RCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVC 74
The following BLAST results are available for this feature:
BLAST of CK935475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_THEAC8.319e-1343.4850S ribosomal protein L44E OS=Thermoplasma acidoph... [more]
RL44_AERPE4.129e-1249.3250S ribosomal protein L44E OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_C02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935475 ID=CK935475; Name=CK935475; organism=Citrus sinensis; type=EST; length=589bp
GGGGGAGTCTCTAGTTACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCT
CTCTCGTCGTCGCCGCAGTCGGCCATCATGGTGAATGTTCCCAAGACTAA
GAAGACTTACTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGG
TGACACAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGA
CGGTATGATCGCAAGCAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTT
CCACAAGAAGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCC
AGGGTTGCAAGCATGTGTCTCAACATCCCATCAAGAGGTGCAAGCACTTT
GAAATTGGTGGAGACAAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCC
TTTATTTTTGTTTTTATGCTTTTTACTTTGCTGCACTTGATGGAACATTA
CCCAGTATGAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGT
TAATTTAAAACTTGAAGCGGTTGTTTGTTAAGTGCTTATTATATCAGTTA
ATTTTATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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